MmuALTA0020673-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036036 | Zfp57
Description
zinc finger protein 57 [Source:MGI Symbol;Acc:MGI:99204]
Coordinates
chr17:37004797-37006066:+
Coord C1 exon
chr17:37004797-37004903
Coord A exon
NA
Coord C2 exon
chr17:37006059-37006066
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TACATTCTAAGTCTTCCCAGCCA
3' ss Score
-0.45
Exon sequences
Seq C1 exon
ATTTCTAGAAGTGGGCACCAACAAATTGTGGCTAGAAGCAGTCTGGAATAGAAGTCAAACGCCTAGGACCAGCCTGGCATTACCAAACAATGGCAGCTAGGAAACAG
Seq A exon
NA
Seq C2 exon
CCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036036-13-19,13-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=89.1)
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types