MmuINT1035648 @ mm10
Intron Retention
Gene
ENSMUSG00000036036 | Zfp57
Description
zinc finger protein 57 [Source:MGI Symbol;Acc:MGI:99204]
Coordinates
chr17:37004797-37006194:+
Coord C1 exon
chr17:37004797-37004903
Coord A exon
chr17:37004904-37006058
Coord C2 exon
chr17:37006059-37006194
Length
1155 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TACATTCTAAGTCTTCCCAGCCA
3' ss Score
-0.45
Exon sequences
Seq C1 exon
ATTTCTAGAAGTGGGCACCAACAAATTGTGGCTAGAAGCAGTCTGGAATAGAAGTCAAACGCCTAGGACCAGCCTGGCATTACCAAACAATGGCAGCTAGGAAACAG
Seq A exon
GTAATCAGAGCCCTGAATTCTATGGCCTGGGCTTTGAGGGAACTAAAGCTGTCAATCATGAAAGGAGAATTTGGACAGTTGAACCATCAAGGAAGACAACCTTTTTTAGAGTAGATACTTTTGTTATAAGAAGCAGTATCAAATTCTGGGGCTCATGTAGGAACCCTCCAACTGCCCAGTGCCTGGGAAATATAGAGTCCCATTAGCCTTGGGATCCAGACCAGAAGGCTCTAAAAGTAGAAAGAGACACCACTAAAGACATGCTGCTCCATGGGGTAGGTAGTATGTTAGCTGCTCTATAGAAGCCCCAAAGAAAGATTATGGGTGGAAAGACTGGGGAGATGGCTCGGCATGTTGTAAAGTACTTGTTGCACAAAGTTGAAGACCCAATGTGGGATCTTCAGTCTCCACATTAAAACAAACGGAAGGAAGACAGACAGACAGACAAGGTCAGCAGAATAATCCCAGAGGCTTTCTAGCCAGATATTCTTGTTGAGTTGAAGAGCTTCAGGTTCAGTGAGAGATTTCTCAGAACACAGGTAGAGCAAAATAGAGGACTTAACATGGAGAGATTACTAGTGAAATCCAACAGCAGAAAGGAGATGGTCCGGTAAAGGAAGTGGCAGGCCCTAGATTCTCTTGAACCTTGGTTCATGTTGAGGTCTTTTACCCACCTGTGGATCTGGTAGAACCCCAGATTGTCCCAGGCCAAACAACAGAAAAAAGGAATTGCAAGATCTCTAACTCCCATACCACCTTGGAATCCTTCATAGGCTCCTCTCCCCTCCCCTCCCCTCCCCTCCTCTCTCCCCTCTCCCCTCTCCCCTCTCCCCTCTCCTCCCCTCCTTTATTTAAGCTGGTGACCAGGAGCAGGCTAGTGCCTCAGGAAAGCTCTTGGCACGGAAACTCAGGGGTACCGCATTTATAAAAGCAAAACCACATTTTTCAGGATAAGTTAAGGGAATCTGTAATATGTGTTTTGCTTACACACTCAGCAGAGATTTTGATTATACATTTGGTTCTATATCTATGGTCAGGACTGTAGAAAGTCCTGAATGCGTTGCCAAGGCAGATGTGATAGTTCAGAGACTTAGGGGCAAAAAGTCCCTGAACAGACACTTCAAGTCTCTGTATTTACATTCTAAGTCTTCCCAG
Seq C2 exon
CCATCCAGGACACCAGTCAGTTATGAGGACGTGGCAGTGTCTTTCACCCAGGAAGAATGGGAATATCTTACTTCTACACAGAAGACCCTTTACCAGAAAGTGATGTCAGAAACCTTCAAGAACCTGACATTTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036036:ENSMUST00000089968:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=89.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCAACAAATTGTGGCTA
R:
CGACAAATGTCAGGTTCTTGAAGG
Band lengths:
230-1385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types