HsaINT1047199 @ hg38
Intron Retention
Gene
ENSG00000204644 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr6:29675386-29676059:-
Coord C1 exon
chr6:29675933-29676059
Coord A exon
chr6:29675488-29675932
Coord C2 exon
chr6:29675386-29675487
Length
445 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTCTCATTCCCACACATCAGCCA
3' ss Score
1.05
Exon sequences
Seq C1 exon
AAGCCAGTCACCTTTGAGGATGTGGCAGTGAATTTCACCCAGGAAGAGTGGGACTGTCTAGATGCCAGCCAGAGGGTCCTTTACCAGGATGTTATGTCGGAAACCTTTAAGAATCTAACATCTGTGG
Seq A exon
GTAAGAGGCTGGGCTTCCCTCAGCAAGCCCCCTGTCCTAAGGGCCCTGGAACATCTGGTTTCCCTGGACAGGTAGATCAGCTTACAATTAGTTTCACTGACCCCTGGTTCTATGCTTTCCAGGTGTGAAAGATCTGAGTCACTAAGCTCAGTGGTAAAGAGAAGAAATGATAGCCTGCATGAAGGCAAAGATAACACTTGTAACATGATGACAGTGTTCTCAAAATATGCAAATTTTTCCATTCATCAAACAAATATTTACTAAGTCACTCCTGAGAACCAGGTACTTTGCTAGCAGCTGGCCTTTTAATGTCTCCTTTCCGCATCTACATGTCCCAGGTTATGGTTCTTAAACAAAGGCTACAGGAGGTAGCCTGTTGTCCCCATCAGATGTGAAGGGGCCATACCTGGGACCAACTCAACTCTTTCTCATTCCCACACATCAG
Seq C2 exon
CCAGAATCTTTCTGCATAAGCCAGAGCTAATCACCAAGCTTGAGCAAGAAGAGGAACAGTGGAGAGAGTTTGTCCATCTCCCAAACACAGAAGGCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204644:ENST00000376883:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=83.7)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCACCTTTGAGGATGT
R:
AGGCCTTCTGTGTTTGGGAGA
Band lengths:
222-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains