MmuINT1035649 @ mm10
Intron Retention
Gene
ENSMUSG00000036036 | Zfp57
Description
zinc finger protein 57 [Source:MGI Symbol;Acc:MGI:99204]
Coordinates
chr17:37006059-37010632:+
Coord C1 exon
chr17:37006059-37006194
Coord A exon
chr17:37006195-37009418
Coord C2 exon
chr17:37009419-37010632
Length
3224 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TTTTCCCTCCTCTACTATAGGAA
3' ss Score
10.68
Exon sequences
Seq C1 exon
CCATCCAGGACACCAGTCAGTTATGAGGACGTGGCAGTGTCTTTCACCCAGGAAGAATGGGAATATCTTACTTCTACACAGAAGACCCTTTACCAGAAAGTGATGTCAGAAACCTTCAAGAACCTGACATTTGTCG
Seq A exon
GTAAGAGACTGACTCCTTCAGCATTCTCCCTGTCCTATAGCCTTAGAAAATACTGTTGGTGTTTCTGCTCAGATAGACCAAAATCAGCCTGAAAGATCTGAGTCACAAAGTTCCGGGGTAAAAAAGGTAAAAGCAATAAAAACTTAGATGACAAGCTAGGCTTGAAAATAAGAGGTAGGAAGACCAGGTTAGGGTGATTCTCAGCTACATAGCAACTTTAAGGCTAGCCTGGACTACCTGCATGGGTTCAGAGAGGAGGCTTAAGGGTTGAGAGAGTACTTGTTCTTGTAGAGGACCTTAGTTCAGTGTCTAGCCCCACATGGTGGCTCACAAACATTCATAACTCTAATTCCAGGGGTCCCACACCTTCTGACTTCTATGGGCACTGGGCATACATATATACATATGTATATGTGTATGTATGTATAGATATATATACACATACATACATACATACATACACATATATATATATATATATACACACACACAAGTAAGCAAAACACTTGAGTCACAAAAAATTCAAAAAAATAAATAAACCTGAAAACAAAAGAAGCACCCCAGGAATACAAAGATAATGTGTGTGTGTTCATGTATATGTAGGTACACTTAGGTGTTCACATGGAGGCCAGGGTTAAATTTGGGCTTCATTCCTCAGGATAGAGCCACTCTATACTTTTTGTTTTGTTTTTGGGTTGGGTCTCACTCATTGGAACTCATTGATTCAGCTAGGCTGACTGACCAGTGAGCCCTAAGGATCTGCCTTTTCTGTTTCATGGTTGGGTTTACATCCAAATGCCATTACACCTGACCTTAGTGTGCATTCTGAGGCTCAAACTCAAGAGCTCATGATTGTATGGTGAGCAGGTTATCTACTGAGCTACTTTCCCAACCCCAAGGCAACACCTTTATCATTGTAATTGTTATATTGTGAAAATATGTAAATTTTCCTGTCAGGCCTGGTTTGTTGACCAAAGCCTGTAATCCCAAGACTTCTAACCCTCCCAACATTCCTGGATCTGACTCGGGGAGATTGCAAACTAAACCCCGACCTTGGTTATAGAGATTGAGGCCAGCTTGGACTACATTGCGAAACTACCTCAAAAAACCACTTGCCTGTATATCCAACTGATATTTAGTCACTCTTGTGTGTGAGGTGTTATACTAGAAGCTGCAACCAAGTGTCTTAGATAAATGTTCTTTAAAAGCACCCCCCACCCCATTTAAAAGGTTTGTTTTATGTATAAGAGTGATCTGCTTGCGTGTTTGTATGCGCACTTTGTGTGTGCCTGGTGTCCATACAGGTTTGAAGAGAGGATGGATGGGATCCCCTGGAACTGGAGTTATGGATGGTTGTAAACTACCATGCAGTTACTCGGGGCAGTATGCAGGTCCTCTGCAAGAGCAACAGGTGCATGAACTGCTGAGCCATCTTGCTAGCCCTAGATTAATGTTCTTAAAGCAAGCCTATAGGAGGTAGCTTGTTTGTTTATAAGACATAAAGGGGCTTAGCATGGGACCACTTTGCTTCATTTCCATACAGCAGACAGACTTGGTAGTGCATCTCACTCAGAAGGATGGAGATATTTCAGAGCCAGCTTACATTGTATATGGAGACCTTGTTACCAAAAACAACAAAACCATGCCCCTCTCCCCACCCAAAATATGACTCCATTTAGAGCCAAAATACAAGATTGGAACAGCTTACAAAAAGAAAAAGGGCAGAGATCAGGTCTCTAACCTCCAAAGACAACAGGTGAGAATTGTAAAGGAAGCTGGGTATGGTAGCTCACATCTGTAATCCCAACACCCTGGTTTCATCGTGCATTTGGGGGCCTATCATCTCACAAAACCAAGGGCCAGCAAAATGGTTCAGTGGTTAGGAGTGCCTGCCACCAAGGCTGATAATTAGAATTTGAATATACTTGGTGTAAAGAGAAAACCAGCCCTACAAGTTGTCTGCCGACCCCCATAAGCACGCCGTAGCATGTGTAACACTTGCACACATGCATACAATATAGTAAAAAATGTCATTTTAAAACTGCAGAGGAGAGAGGAGGGTTAAAAAGACCCAGGACAGTCCCAGCATGGTGAGCTGACCTAGTGCTTCAGGCTCAGTATCTTTCCATCTGCGTTAGACTTGGGACTAGAGGAAACCCCGAGATCAAAGTTTTAAGTCCACTGGCTTCGTAATGAATAGCCAAGATTTTCAAAACAAGTCATCCTAGTTTCCAGGAATGGAGAGATTGCATCCTTTGATTAAGAAGTTCTTCCTGGGAGAAACAAGCTCTCCACAGCCTTGCTCTGGAGAACGATAAGCTTGTTCCAGAGATAGGAGGACTTAAGGAACTGAGAGGAATGTTAATTGAGGTTGGCCACACTTCCCAGCTCAGACGGTCCTGGTGTGTTGCTTTGTGCTCCAATTCAGTTATTAGTAATGATAGCATCAATCTTCATGATACAGTCGTCTTCCCTTGGGTGGGAAGTGTAGCTAGCTCACTGGTAGAGCGCTTTGTGTCCCTTGTGCACATGGTTTGCTTCCCCAACACTGGGGGATGAGTTCTCTGTATCTGAAAGTATTTTGTTCAGGTGGTTACTGAAGCTATAGCCACACATAGTACTGAGGCCTAATTGCTTGGTTTTTGTTTTTACAGAGCTGGGGATTGAGCCCTAGGTTTTGTGTGTACTAGGCAAGTGCTGTGCTGCTGAACTATATCCCCAGGTCCTAAGTTCTGTTTGCTGTAGTAGACACAGTAGTAAATCAAAATACTAGTAATATAGAATAATTATAATCTATATTAAAAAGTGATGTGAATGTGGTCTTACAGTAGGGAATTCTCCATTAATATTTTGTACTTGGCAGACACGTGTGTAATCAGGGCTGAGGGGAGGACTACTGCTTCATTATCTGTGGGGTTATCTGGGAGACTGAGTCGTAGTGAGAGTGGGAAGATGGATTTCAAAGATGTAAGTTGGGTATTTAGATATTTGCAATTATAGAAGATGCCTATGAAACTTTTACTAGTCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGCAGCAGCAGCAGCAATTATTACATTTTCCTATTTCTAGCCTATGAAGCCCAAGGGTGAATGGCTGCATTTTAAAGGTTGGGAAAAGGGAAAGTGGCTTGTACTGAGCACAAACCTTGTGCAGGCATTCTCATAATGAACTGTGTATTTTCCCTCCTCTACTATAG
Seq C2 exon
GAAGCAAGAAGAAACCTCAAGAACCTAGCTCAGATCTGCAAGATAAGAACGAGGAGCAGGAGAAGTCCTCCAGTTGCACAGGGGTATTCAAAGGTGGACCATTCTTTTTCTGTCTGACCTGTGGCAAATGTTTCAAAAAGAACACCTTCCTCTTTAATCACCAGTTTCCTGTGAGGTCCCGGAGGCTGGCAGTCACAAATCCACAAAGCCGCAAAGGCAAGGGCTACAAGGCTCAGCATCGTGGAGAGAGGCCTTTCTTTTGTAATTTCTGTGGCAAGACTTACCGTGATGCTTCTGGACTGAGCCGTCACCGACGTGCTCATTTAGGTTATAGGCCCCGTTCATGCCCTGAGTGTGGAAAGTGTTTCCGGGATCAGTCTGAGGTCAACCGTCACCTGAAGGTACACCAAAACAAGCCAGCAGCTAGCAACCAGGCTGGCAACCAGGCTAGCAACCAGAGGCTGAAGAGTAGGGTTCCACCTACAACACCTAGATCCCAAGCGCCCGCCCTCAAGTATGTGAAAGTGATCCAGGGACCAGTGGCCAGGGCTAAGGCACGGAACAGCGGAGCCTCGACCCTGAATGTCAGATCCAACTCTATTACAGTGGTCCGTTCAAGAGAAAAGATCTCTTGTCCCTATTGTCACATAACGTTTACCATGAGAACCTGTCTCTTAACCCACCTCAAGATCCACTTCAGACGTCAACCCAACCAGCACTTCTGCTGCAAAGAGTCGGCCCACTCATCCAACACACTCAGAATGCAAAAGATCTACACTTGCCCCGTCTGTGACAGCTCCTTTAGGGGAAAGGAGAGCCTGCTGGATCACTTGTGCTGCCAAAGACCAATCAGATTCAGTAAATGCTGGGAAATCCTGGGTCATTTGCTCGGCTATCTTCATGAACCCGTGGTGCTGGGAAATATTTTTAAAGTAAGGGACTCCTCGGGAAAGAGGATGGAATCCAGGAGGAGAAGACGGAAACGTGCCTGCACTGAGAATCCTGAAACAGAAGGCCTGTCTGGGAAAGGTAGGGTGGCTCCGTGGGAAATGGAGGGTGCCACCAGCCCTGAGAGTCCTGTGACAGAAGAAGATTCGGACTGATTTCTGACTTCACACCTACCCATGCACGACACCCCCCACCCCCACCCCTTACCCCCACCCCACAAAATAAATACAATTTTTAAAACTAAAAGAAGGGGAGGGGAGGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036036:ENSMUST00000089968:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.358
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=89.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types