HsaINT1047200 @ hg38
Intron Retention
Gene
ENSG00000204644 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr6:29672483-29675487:-
Coord C1 exon
chr6:29675386-29675487
Coord A exon
chr6:29673759-29675385
Coord C2 exon
chr6:29672483-29673758
Length
1627 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCTTCCTCATTCACTGTAGAAG
3' ss Score
7.7
Exon sequences
Seq C1 exon
CCAGAATCTTTCTGCATAAGCCAGAGCTAATCACCAAGCTTGAGCAAGAAGAGGAACAGTGGAGAGAGTTTGTCCATCTCCCAAACACAGAAGGCCTTTCAG
Seq A exon
GTAAGAATTGCCAAGCAGGGAGGAAGGGGAAAAGGGCCCAGGATAACCCCTGAAAGGATGGAGAGCTGATGAAGAGGATGAATGCTCTATAGATGCTCTCCTAGTGTACCTCTGTCCAGCCTGGTCAGACTTGGAGTTGAAAGAGAGCTTAATATCATAGGCTCAAGTCCCTTGACTTCAAGTTGAAGATCCAAGTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTGAGACACAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTTACTGCAACCTCCACTTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGACTACAGGCATGTGCCACCGTGTCCAGATAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTTGATGTCTTGACCTCAGGTTATCCATCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCTGGCTGAAGATCTAAGTCTTTCAGGAGAAGTAGATGTCTTCAGTTTCTAGAGATTGAGAGATGACATGAAAGTTGCTTATGTCCATGATAGTGCTCTGATTAAAATGTTCTTTCCAAGAGAAAAGAGAAGCAAAGGAGATAGGTTTCATGCTGGGTTGGAGTAAGGGAGGCTTGTCCCTGGTAGTAAATAGTTGAGAGAGATATCAAGCCAGGCTGATACACTTTTTGGTTTTCCAGGACAGTCCTGGTTTATACTTCTCATCCCAGCTTGATTATTAATAACACCTCTTTTCACCCTCAAGTGGCCCAGTGTTCATGATGCATTATTATGTGGGTGTCTGTGGATTGTCTATGGGAGTTTGAGCAATATTGAGAATGAGATAAGATAGATTTCAAGAAGTGTTGTTGTAAGTTAAAATTTACATTTCTGACAGTGTTGAAAGATTCCAGTTAACTTTTTATTTGCTTCTAATTTGAAAAGCCAATTTTTTCTTTTTTTCTTCTTATTTCTAGCCTATGAGGCCCAAGGGTAAGGATGAATGTGTTGGGTGGGAGAGCAAGGGCAGAGACAAGAAGTGTGTTAGGCTGAATGGAGTGCTGTGTTGGAGTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCGTCTTCGTCTTCTTCTTCTTCTTCTTTTCTTTTCTTCTTCTTCTTCTTCCTTCTTCTTCTTCTTCTCCTTCTCTTCTCCTTCTCCTTCTTCTCCTTCTCCTTCTTCTTCTTCTTTTTCTTTCTTTCTTTTTTTTTTTTTGAGACAGAGTTTCACTCTAGTTGCCCAGGCAGGAGTGCAGTGGCACCATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCGAGTGATTGTCCTGCCTCAGTCTCCCTAGTAGCTGAGATTACAGGCAGATGCCATGACGCCCAGCTAATTTTTGTATTTGTAGTAGAGACAGGGTTTCACCATGTTGGTCAGGCTGGTTTCGAACTCCTAACCTCAGGTGATCCGCTGGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCAAGCCTCTGTTGGAGTTCTTACAGTGAATTTTGTGTTATTCTTCCTCATTCACTGTAG
Seq C2 exon
AAGGCAAGAAGAAAGAGCTTCGAGAACAACATCCCAGTCTGAGAGATGAGGGGACTAGTGATGACAAGGTCTTCCTTGCATGCAGAGGGGCCGGCCAGTGCCCCCTATCTGCCCCAGCTGGGACTATGGACAGGACCCGGGTGCTTCAAGCATCCCAGGCTGGGCCACCCTTTTTTTGCTACACCTGTGGCAAATGTTTCAGCAGGCGCTCCTACCTCTATAGCCACCAGTTTGTTCACAATCCCAAGCTGACTAACAGCTGCAGTCAGTGTGGGAAGTTGTTTCGGAGCCCCAAGTCCCTCAGCTATCACAGACGCATGCATCTTGGGGAGAGGCCCTTCTGTTGCACGCTCTGTGACAAGACCTACTGTGATGCTTCTGGACTAAGTCGTCACCGCCGCGTCCATCTGGGTTACCGGCCCCATTCATGCTCTGTGTGTGGGAAGAGCTTCCGGGACCAGTCTGAGCTCAAACGCCACCAGAAGATACACCAAAACCAGGAGCCAGTGGATGGAAACCAGGAGTGTACTTTGAGGATTCCAGGCACCCAGGCTGAATTCCAGACACCCATCGCCAGAAGCCAGAGGTCCATCCAGGGGCTTTTGGATGTGAACCATGCACCAGTGGCCAGGTCCCAGGAACCCATATTTAGAACTGAGGGTCCTATGGCCCAGAACCAGGCATCTGTACTTAAGAACCAAGCACCTGTGACCAGGACCCAGGCACCCATCACTGGAACCCTCTGTCAGGATGCCAGATCCAACTCTCATCCAGTGAAGCCCTCAAGACTCAATGTCTTCTGTTGCCCCCATTGTTCTTTGACTTTTAGCAAGAAATCCTATCTCTCCAGACACCAGAAGGCCCACCTCACAGAGCCGCCCAACTACTGCTTCCATTGCAGCAAGTCTTTCAGCTCATTTTCCAGGCTGGTCAGACACCAGCAGACCCACTGGAAGCAGAAGAGCTACCTTTGCCCTATCTGTGACCTCTCCTTTGGGGAGAAAGAGGGCCTTATGGATCACTGGAGGGGCTATAAAGGCAAGGACCTGTGCCAGAGCAGCCACCATAAATGCCGGGTGATCCTGGGCCAGTGGCTTGGCTTCTCTCATGATGTCCCCACTATGGCTGGGGAGGAATGGAAGCATGGAGGTGATCAATCTCCCCCCAGGATCCATACCCCCAGGAGAAGAGGCCTAAGAGAGAAGGCCTGCAAAGGAGACAAAACAAAGGAGGCAGTGAGCATCTTGAAACATAAATAAATGGCCTTTCTGACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204644:ENST00000376883:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.284
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF0009621=zf-C2H2=WD(100=5.5),PF138941=zf-C2H2_4=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCAAACACAGAAGGCCT
R:
TGCATGCGTCTGTGATAGCTG
Band lengths:
348-1975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains