DreINT0140923 @ danRer10
Intron Retention
Gene
ENSDARG00000098681 | si:ch73-138e16.7
Description
si:ch73-138e16.7 [Source:ZFIN;Acc:ZDB-GENE-070705-206]
Coordinates
chr22:1306616-1312248:+
Coord C1 exon
chr22:1306616-1306792
Coord A exon
chr22:1306793-1309535
Coord C2 exon
chr22:1309536-1312248
Length
2743 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TCTTGTTTCTTTCATTGCAGATC
3' ss Score
11.55
Exon sequences
Seq C1 exon
GAAGGCCCATCTTAGAGTTCACACAAGGGAGAAGCCGCATTCATGTTCTGAGTGTGGACAGAGTTTTACGCTGATGTACGATTTAACCGAACATCAGAAATCACACACTGCTGAGGTTTCATTAGAGCAGGACATCGAAGCAGATGATCACTGCTGACATCAAATTCGTTGAGTGTG
Seq A exon
GTAAGTCTATTTTTTGTATATTTTCCCACTGAAATTATATGGTTGGTAGAAATCAATAATAACTGTATCACTATGATTGATTACAACAAAAACATAATGACAACTAGCTATTGGTAAATCATCACTGGCAGCAGCCAAACCACTTCTTATAAACAAAACAGATTACCCTACCACTCGTTAAGCAAAAGTACGGCTGCGTCCAAAACCGCATACTTCCATACTATACAGTACGCTAAAATCAGTATGCGAGCCGAGTAGTATGTCCGAATTCATAGAATTCGAAAATCGGTATGCGAGAAGGGCCCGGATGACTTACTACTTCCGGCGAGATTCTGAAGTGCGCATCCCATGCACGCTGCGCTATCCCATGATGCCCCGCGAGCGAATTCATGAATGGGAGTGAAGCGACTCAAATGACGCAGGTAGGTCGCATGACCATGACAAAATGGCGGATGTAGTACGTCCGAATTCCATTCATACTTTTCACATTCGTACTGTATAGAACGTACTTTTCTAACGGCCTAGTAGTGTGTTTACATTCAAATGCAGTACCTACTGAGTAGTAGGCGGTTTCGGACGCAGCCTACATCACAGAATGTCATTGACATAGTGGCTGGCTGCTTTTACTTATGCTTGCAGACAGGACTTCATCTCCATTAGTCATCATTGTTAAATGTACTGTGCTTTCGGGAAGTATTCGAATCAGAAGAATTCATAGAGCCTCCCTTTTGACATTTGATGCAATATTCAATTTCCTATAATGACAATGTGAAAGTGTTGGGTTTGAAATCTTTGCAGGTTCTTAAAGCAAGAGTCCACTAGTATCAGTTCACAAGGATTTTTAGACCTTTTCAGTGATGTTCAGGTCTGGGCTCTGGCTGGGCCACTCAAGGACATTCAGAAAGTTTTTGCACAGCCTCTACTTTGATGTATTGGCTGTGTGCTTAGGGTTTTTGTCCTATTGATAGATGAAACATCTTCCCAGTTTGAGGTTGAGTGCCTTGAAGCAGGTTTCAATCAAGAAGGTCTCTGTTCACTGCTGCATTTATCTGTCCCCTGACTAATCGTCAAGTTCCTGCTATGATAAACATCCCCACAGCGGATGCTGCTACGCCATGGTCACTGAAGAGATGGTATCGCTCAGTTGACTAGCGCTGCCTGCTTTTCTCCAGACAAAGGGTTAACTTTGTTTCATCAAACCTGAGAATTGTTTCTCATTGCATGAAAGTTCTTCAAATACCTTTTTGTCAAATACATTTTGCCCATCAGATGAGAAGTGCCACTGTGGCACACTATTCCACATTGGTTTCTATTTGTCTTAAATAGGCACCATTGGAACTTTGTAGAAGTGCTTTGAAGACCGCACAATGCAGTGGCACTTCAGAATCTCAGAATCTCTCTGCGAGCAATCATACAGGTGTGGATAATCTGTACTAGCTCGGCTACCTGCCCCCCAGTGTATATTCATCTTCCTAACTTAGTGATCTTATGTTGAATGTTGACCTCTGTGGATATGAGATACAAATCAACCACAATTCAGTGAAGACTCCAGAGTTCCAGAACACAGCATCTGATCCTGCCAGAACTAACTTTTTGTTGGCTGGTATTTCTTCAAATTTACATCATTTCAGTTTTGTTTGGAGCATCCCTTAAGACAGGGGTGCTCAATCCTGTTCCTGGAGATCTACCATCCTGCAGATTTCAGTTGCTACCCATATCAAACACACCTGCCTGTAATTATCTAGTGCTGTTCAGGTCCTAATTAATTGGTTCAGGTGTGATTGATATGGGTAGAAACTGAAATCTGCAGGAAGGTAGATCTCCAGGAACAGGATTGAGCACCCCTGCCTTAAGATCTCAGATCTGTGCCGGTGGCCACTTTAATGGAGTGGTATTGGTGCAACTTAATTTATGGAGGCTTCAATTCTGCAGAACTTTCTGTGCCTTTATACAATCTTGACTCTGGGATCTACAGACAATTCCTTGTGCGTCATGGCTTAGTTTGTGCTCTGATAACTTAGTGTACTCTAATCAAGTTGTAGGAACATCTCGAGATGCACCTGAGCTCAGTTTAGCGCAGGGGTGTTAAACGTTGTTGCTGGAGGGCCGCAGCTCTGCATAGTTTAGCTCCTATCCTTCTCCAACACACTTACCTGTAGGTTTCAAACAAGCCTGAAGGACTCGATTACTTTGATCAGGTGTGTTTTAAATAGAGTTGGAACTAAACTGCAGAGCCGCGGCCTTCCAGGAACTGAGTTTCACACCTGTGGTTTAGAGTCTCACAGCAAAAGATTTGAACACTTATTTTCCTTTTAATTCATGAAATTGCAAAGATTTCAAACAAGCTTCTTTCATGTTGTGATTTAAGGGGTATCTGTAGAAGTTTGAGTAAAATTATAAATTGAATCCATCTTCGAATACAATAATGACCACCAACCCTGTTCTTGGAGATCTACCTTACTGCAGTTGCAACCCATATCAAACACACCTGCCTGTAGTTATTAAGTGCTCTCCTGGTGAGTTTGATCAGGGTTGGAGCTGACCTCTGCCGGTTCTCCAGGAGCAGGGTTGAGCAGCCCTGCTGTTATACAAAAGTTTTAAGAAATTTGTTCATGAAAGGTGCTTCAATATTATGGTTATTTTTGCAGCTGCTGACTACTTTTAAATGTCCTTTTTGCTTAACGTTTTTCTGTGGATTATTAGGGTTAATCAAAATACTTTCCTCTTGTTTCTTTCATTGCAG
Seq C2 exon
ATCTGATGGTGGAGAATTGAGAATGGAACCAACATAGGGAAAACTGGAAAACAAACTGAACTTATTTTTACAGAAAAAGAGCCTGGAGATATTTCACCTGCAGTCACTGTGGAAAGAGTTTGGCGATCTTTAAGACTCACGTGGAGATCAGCACACAAATAACACCATTGTGTTTCATAACTCAACTTCTGTACTGGACTATTGGAGTACTCTATTGGTCTTTCAATCCAACACCATGATGCCCCTGCAGCTGATCCTGAATCAGCAGTGAGAGCGGTTGAAATGAACTGAAAAGAGTGCATGTCTTACGCCTCAATTTACGCTGGCTGCCAATCGCCGAATTCAAAACCCTTTAAACTTCCAAGGAGAGTTACAAAGGCTTATTACAAGTCTTTTGAAAATATCTATGCATATATTCTAATCTATGTCAGTGATGTTACGATATATATATATATATAGGGTTCCTCAATTGATAAAAGGTTGTTGTTTAGTAGTCCAACTATTGATACTAGCTAGCATATTTTATCTTATTTGTAGTGTGGCAGAATGAAACTGCAGGTCGTCAACGCTTCACCTTCACTTTGTGTCCGTCAGCACCGCTTAAGTGGCATTGCTCACTGTAGAAATTGGGAGTTCATCAACTTCAAGTGCCACTGAAAGCGTCAGCAATCAGATTGCTTTATGCAACTACCCCAGCTCAGGCAGTAGCCGATTGCGGACTAATTTCATTGGCGATCACGTCAGCCCCAACCTCAGACACATCCTCTGTCAAGCGCTGATGCTTAAGCCCCATGTGAATCAGGCATTAGAGCAGGTATGATATGTAGTAGTGGATTATTATTGTATTTATTTTTTGCTGCCTTGTTGAAGATGCACCGATCGACCAGTCGATGACCAGAATCGGACCTTTTTTACTTTATTATTATTATTATTATTATTATTATTAGCCTTTGCATGACTGTTAACCGGCCGGTCATCTGTTTGATTAGCTTTTTACAATCAATCACTCGGGTTAATTGAAGCTGTTCCAGGTTACGAATGATCATTTTGACGAGTTACTCGTTAATCAACGGCAAACGTTTTGACCGATTCAGATTGAAAATTCAAATGCAGTTTTGGTTTTTCCGTTCAATCTGTGTTTAATACATTAGCTACACGAGTAACTATTCTGCTAGACACTCAAAACTGCTTTCAGAGAAAGGAAAGTGCTTTACCAGAGCAAGATACAAGATCAAAGATATCAGAAATTATTCATCGTCGAAAAATAATACAAAACAAAGCATTCGAATATTAATCAAAACATTTCATTAGCGTTTGCTTGTAATCTTTGGACTTTTGTGAAATAAGAAAGTGACTGTACAATTACAGATTTTGTTATTATAGCAGTTTGGGGAAATCTAATGTTTGTATGGATTTCGTATGAAGCAGAAACTGTTGAATGTGGCGTAATAATAACTCCGATGTTAAGTATTGAAAACACAAGCTCATCCAGCTAACCAACATGAACCTGTTAGATCTGTTTGAAGACCACTCTTATGACTCCACGTTAAGCTGTGGTATCGTTAAACCATGCCTTTGTTTGTTTGTTTTGAAAGTGCGCCCTCTATCTTTTGCTCTTGCTATTTCTTTTATTTTTATTGACTATAATTTAGTCAAAGTATGTTGTAATATTGCAAAATATTACTCGAACATTACTAAAAGTTGATAAGCAATAATGCCTTACTACAGCATTACAGCAAGCAGTCATTTGTTACCGACGTACATGTTTAGTTTTGCTTTTGGAGCGCATTACATTACAACTCTGTTCGTCAACACTTGATCCCTCCAACCCTCCTTATTCATCTCTTTATTTTCATCTTTGCTTCAAAATATTGTCAAACGAGCAGGTATAATTTGTGGTAGTAGCTCACGCAGTCTGCTCTGTGAAATAAGGAAGTGACTGTAAAATTACAGATTTTGTTAGTAGAGTAGTTTGGGGAAATCGAATGTTATATGGATTTCGTATGAAGCAGAAACTGTCTAACGTGGCGTAATAATAACTCAGATGCTATTAAATATTGAAAACACAAGCTCCTCCAGCCAACCAACATAAACCTGTTAGCTCTGTTTGATTTCACATTAAGCTGTGGTATCGTTAAACCATGCCTTTGTTTGTTTTGAAAGTGCGCCCTCTATCTTTTGCTATTTCGTTTTTTCATTTGATTACTTTTTCGAAAGTGTGTTGTTATGCGTTACTGAGACTGTGCCAAGTCGAATATTGCTAAAAGTTGAGCAGTAATGCCTTACTACAGAATTACAGCAGTCAATTGTTGCCAACGTGCATGTTTAGTTTCACTTTTGGAGCGCATTACAACTACATTCGTCAACATTTTTCTTCCCTCCAACCCTCCTTATTTATCCATCCTTATTTTCATCTTTGCATTTGCTTGTTTAAAAAGAGGTGCACAGTACTAAACAAACCCAGATCTGTCTCTGCATCCACATACTGTTGCTGTTCTGCTGTTTTGAAGTGCTGTTATCCTCTTTGTGAGATGCTTTTGGACGACAGCATGTGCTGGATGAATAAAATGTAAGCTATATTTGCTTTTACTGTTTAATCTGATAGACTTGTTTGCTTATTATACTCCCATGGTAGAACTTTCAAGTATCTTATTGTATTCTCAATTATCATATTGTATTATTTTTCTGTCTTTTATCAGTAAAGTTTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098681:ENSDART00000169850:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]