HsaINT1047204 @ hg38
Intron Retention
Gene
ENSG00000184939 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr16:68539213-68539825:+
Coord C1 exon
chr16:68539213-68539469
Coord A exon
chr16:68539470-68539757
Coord C2 exon
chr16:68539758-68539825
Length
288 bp
Sequences
Splice sites
5' ss Seq
GCGGTGATT
5' ss Score
3.55
3' ss Seq
GCCCTGTCCTTTCTCCCCAGCTC
3' ss Score
10.8
Exon sequences
Seq C1 exon
CGGGCCTCTGGGAAGTGTAGTTCGCGCGCCCGGCGTGGACCCGGGGTTGCAGGAGCGAGGCTCCGAGTGCGCAGGCGCACTTCCAGTTCTGCCCCACCGCTGCGGCCATTGTCCGACCCCGGTGCGGCTGAGGCCCCTTTGGGCAGCCCCTCCGCAGATCAGAATTGGAGATAACCGAGGCTTCGGCGGGGGCGGGAGGAGCTGCCCGAGGCTCTGGGTGGGCCGGAGGTCGCGAAATCCGGAGCCCCCCAGAGGCG
Seq A exon
GTGATTCTGAGTGCGCGGGTCTGGGCGGGACCCCTCCTGGGTTTGGCGGGTGTCAGCCGGGCCTCGCCCACCACCCTGCGAAGGGGACTGGGCGTGGCCGGAGGGGGGTGTCCGGGAGGCCGCTGAGCCTTTCATTTCGGGGATGGGGAGCGGCAGGCCCGGGCTGGTTCCACGGTCCTCGCCACCATCTCCCCTGGAGATGTGGTTTAGGGGCGGAGGTGGGGCGGGGCGGGGCGGGGTGGGGTCGGTGTTGCAGCGGGGTGAGTGGGCCCTGTCCTTTCTCCCCAG
Seq C2 exon
CTCCTGCCCCGGAGCCGGGCCCTGGCGAGGCAGGAATGGCCCCGAGGCCTCCGACCGCCGCGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939:ENST00000570495:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.965
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PU(4.2=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTCTGGGAAGTGTAGTT
R:
CATTCCTGCCTCGCCAGG
Band lengths:
294-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains