HsaEX0072678 @ hg38
Exon Skipping
Gene
ENSG00000184939 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr16:68539213-68558105:+
Coord C1 exon
chr16:68539213-68539469
Coord A exon
chr16:68539758-68539825
Coord C2 exon
chr16:68557998-68558105
Length
68 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTCCTTTCTCCCCAGCTC
3' ss Score
10.8
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGGGCCTCTGGGAAGTGTAGTTCGCGCGCCCGGCGTGGACCCGGGGTTGCAGGAGCGAGGCTCCGAGTGCGCAGGCGCACTTCCAGTTCTGCCCCACCGCTGCGGCCATTGTCCGACCCCGGTGCGGCTGAGGCCCCTTTGGGCAGCCCCTCCGCAGATCAGAATTGGAGATAACCGAGGCTTCGGCGGGGGCGGGAGGAGCTGCCCGAGGCTCTGGGTGGGCCGGAGGTCGCGAAATCCGGAGCCCCCCAGAGGCG
Seq A exon
CTCCTGCCCCGGAGCCGGGCCCTGGCGAGGCAGGAATGGCCCCGAGGCCTCCGACCGCCGCGCCCCAG
Seq C2 exon
GAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCACCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939-'4-20,'4-12,7-20
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.965 C2=0.082
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PU(4.2=9.1)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCGCAGATCAGAATTGG
R:
CTGAGCAGGGTCGACATGGTA
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development