HsaEX0072678 @ hg19
Exon Skipping
Gene
ENSG00000184939 | ZFP90
Description
zinc finger protein 90 homolog (mouse) [Source:HGNC Symbol;Acc:23329]
Coordinates
chr16:68567597-68592027:+
Coord C1 exon
chr16:68567597-68567758
Coord A exon
chr16:68573661-68573728
Coord C2 exon
chr16:68591901-68592027
Length
68 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTCCTTTCTCCCCAGCTC
3' ss Score
10.8
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACAGAGTCTTGCTCTGTTGCCCAGGCCGGAGTGCAATGGTGCAATGTCAGCTTACTGCAACCTCCACCTCCCAGGTTCAAGCCATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAGCCATCACGCCCAGCTAGCCATCTTCTAATTTTCATTCCTTCAAAG
Seq A exon
CTCCTGCCCCGGAGCCGGGCCCTGGCGAGGCAGGAATGGCCCCGAGGCCTCCGACCGCCGCGCCCCAG
Seq C2 exon
GAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCACCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTATAGCCACCTGGTTTCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.093
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PU(4.2=9.1)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACTGCAACCTCCACCTC
R:
AGGGTCGACATGGTACCATTCT
Band lengths:
179-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)