BtaEX6081121 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007488 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr18:36008030-36023321:+
Coord C1 exon
chr18:36008030-36008202
Coord A exon
chr18:36008479-36008547
Coord C2 exon
chr18:36023195-36023321
Length
69 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTTCTCTCTCCCCAGACC
3' ss Score
12.83
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCACCTCCCGCTCTAACGGGCCGCTGGGGCCATTGTCCAGACGCGGTGCGGCTAAGGCCGCTTTGGGCCGCCCCGAGCGCTTCAGAATTGCCGAGAACTAGGCCCGCAGTGGAAGGAGCCGGCCGGAGCACCGTATGGGCCCGAGGCCGCGAAGTCCGGAGCCCCAGCAGGCG
Seq A exon
ACCCTGTCCCTGGGAGCCCTGCCCGGCGACCCAGGGATGGCCCCGAGGCCTCCGACGGCCAGGCACCAG
Seq C2 exon
GAATCACTGACATTTAAGGATGTAGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGATGCTGCTCAGAGGCGCTTGTACAGGGATGTGATGTTGGAGAACTATAGCCACTTGGTTTCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007488-'1-2,'1-0,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCAGAATTGCCGAGAAC
R:
GTACAAGCGCCTCTGAGCAG
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]