RnoEX0101754 @ rn6
Exon Skipping
Gene
ENSRNOG00000020087 | Zfp90
Description
zinc finger protein 90 [Source:RGD Symbol;Acc:1563077]
Coordinates
chr19:38597618-38601650:+
Coord C1 exon
chr19:38597618-38597913
Coord A exon
chr19:38598131-38598197
Coord C2 exon
chr19:38601524-38601650
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATCCTGTCCTCTCTCCTCAGCCC
3' ss Score
9.6
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAACCAGTCAGCCTTCTTGTGTTCTTACCACAGCCCTCACTAGGAGGCGGGGCACCTCTGCAGGGCGGGCACGCGAGGATAGCTGGGAATCGTAGTTTCTGGGCCCGCAGATGGGCAGGCGCGAGGATCAGTGTGCGCAGTCGCACTTGTGGCTCTGCGCCCGCCGCTGTGGCCATTGTCCGGCCCTGTTGTTGCAGAGCTGCACCGCCGAGAACAAGAAACTGCAGCGGGCGCTAGAGGGACGGACCTGAGGTCGCGGATTCCGAAGCCCCGGAGCCAGATTTCGAGTGCCGTGG
Seq A exon
CCCTGGACCATAGCCAGCACTCACTGAGGCAGGAATGGCCCCGAGACCTCCGACGGCCACGCCCCAG
Seq C2 exon
GAGTCAGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCGCCATGTGGGCCCCGCCCAGAGGAGCTTATATAGGGACGTCATGCTGGAGAACTATAGCCACCTGGTTTCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020087_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.140
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCCGAGAACAAGAAACTG
R:
ATATAAGCTCCTCTGGGCGGG
Band lengths:
177-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]