RnoEX0101755 @ rn6
Exon Skipping
Gene
ENSRNOG00000020087 | Zfp90
Description
zinc finger protein 90 [Source:RGD Symbol;Acc:1563077]
Coordinates
chr19:38598165-38602063:+
Coord C1 exon
chr19:38598165-38598197
Coord A exon
chr19:38601524-38601650
Coord C2 exon
chr19:38601968-38602063
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGACTGTGATCCCACAGGAG
3' ss Score
4.63
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
ATGGCCCCGAGACCTCCGACGGCCACGCCCCAG
Seq A exon
GAGTCAGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCGCCATGTGGGCCCCGCCCAGAGGAGCTTATATAGGGACGTCATGCTGGAGAACTATAGCCACCTGGTTTCGCTCG
Seq C2 exon
GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAACTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAGAGAACTCCAAAGGCCTTTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020087_MULTIEX1-2/4=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.140 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTCCGACGGCCAC
R:
GGACAGAAAGGCCTTTGGAGT
Band lengths:
119-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]