RnoALTA0045857-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020087 | Zfp90
Description
zinc finger protein 90 [Source:RGD Symbol;Acc:1563077]
Coordinates
chr19:38601524-38602063:+
Coord C1 exon
chr19:38601524-38601650
Coord A exon
chr19:38601874-38601967
Coord C2 exon
chr19:38601968-38602063
Length
94 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
GCACCTTTTCTTTTCTTCAGAGT
3' ss Score
9.62
Exon sequences
Seq C1 exon
GAGTCAGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCGCCATGTGGGCCCCGCCCAGAGGAGCTTATATAGGGACGTCATGCTGGAGAACTATAGCCACCTGGTTTCGCTCG
Seq A exon
AGTTCCTGAGGATCAAGGACTAGTACTGACTTATAGGAGGGCCCTTTGTCTACTTGCTCAAACACCCAAATCTTGTGTGTTTACCCATGAGCAG
Seq C2 exon
GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAACTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAGAGAACTCCAAAGGCCTTTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020087-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.136
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCCAGGAAGAATGGCG
R:
AGGCCTTTGGAGTTCTCTCTCT
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]