RnoINT0168735 @ rn6
Intron Retention
Gene
ENSRNOG00000020087 | Zfp90
Description
zinc finger protein 90 [Source:RGD Symbol;Acc:1563077]
Coordinates
chr19:38601524-38602063:+
Coord C1 exon
chr19:38601524-38601650
Coord A exon
chr19:38601651-38601967
Coord C2 exon
chr19:38601968-38602063
Length
317 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
GTGTGTTTACCCATGAGCAGGGT
3' ss Score
4.04
Exon sequences
Seq C1 exon
GAGTCAGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCGCCATGTGGGCCCCGCCCAGAGGAGCTTATATAGGGACGTCATGCTGGAGAACTATAGCCACCTGGTTTCGCTCG
Seq A exon
GTAAGGAGGGGCCACCCCCTCAGTGACTCACATACTCCTGAGTTTCCTTCTAAGGTTTGGTGCACGCAGCCTAGACAGAAGGAAGCCCGAGGCTTGGTTGGGGCCTATGTTTTGGGGAGCCAGCTTTCCTGGGCTTTGAGCATGGAAGATCCTTATGTTATAGAACTAGGAAAGGGGGCTTTGCTAGTGTGTCTCCTTAAGTTGCACCTTTTCTTTTCTTCAGAGTTCCTGAGGATCAAGGACTAGTACTGACTTATAGGAGGGCCCTTTGTCTACTTGCTCAAACACCCAAATCTTGTGTGTTTACCCATGAGCAG
Seq C2 exon
GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAACTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAGAGAACTCCAAAGGCCTTTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020087:ENSRNOT00000027209:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACATTCAAAGATGTGGCTGT
R:
GGACAGAAAGGCCTTTGGAGT
Band lengths:
216-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]