HsaINT0185550 @ hg19
Intron Retention
Gene
ENSG00000184939 | ZFP90
Description
zinc finger protein 90 homolog (mouse) [Source:HGNC Symbol;Acc:23329]
Coordinates
chr16:68591901-68592471:+
Coord C1 exon
chr16:68591901-68592027
Coord A exon
chr16:68592028-68592375
Coord C2 exon
chr16:68592376-68592471
Length
348 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GTGTATTTACCCATGAGCAGGAT
3' ss Score
4.08
Exon sequences
Seq C1 exon
GAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCACCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTATAGCCACCTGGTTTCTCTTG
Seq A exon
GTAAGGACCACTTCTCTGAGTGTCTTTCCTGCTGATGGGCCTTTCCTTCCTTGGTTGCTATAGTGGTGGTGCCCAGAGCTTAGGTAACTGTGACCAGGGTGCTCAGGGGTCAGAGCTTGTTAATCTCATTGGGACCCAGTTTTATGGGGTTTTGAGCCTGCTCTTTAGGTAAAAGGTCTTTATTTTGCAAAACTGGAAATAGGCAATTTGATTGCATGACTCCTTAAGTTGCACCTTTTTTTTCCTTCAGAGTTCCTGAGGATCAAGGACTAGTACTGACTTGTCCTTAGGAGGGTTCTTTGTCCACTTGCACAAACAACCAAATCTTGTGTATTTACCCATGAGCAG
Seq C2 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATATCAGAGGGAGAAATCCAACGACCTTTCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939-ZFP90:NM_133458:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGTGACATTCAAAGATGTGTCT
R:
CTGGATAGAAAGGTCGTTGGA
Band lengths:
222-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)