BtaINT0164400 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007488 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr18:36023195-36023745:+
Coord C1 exon
chr18:36023195-36023321
Coord A exon
chr18:36023322-36023649
Coord C2 exon
chr18:36023650-36023745
Length
328 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
ATGTGTTTACCTGTGAGCAGGAT
3' ss Score
5.29
Exon sequences
Seq C1 exon
GAATCACTGACATTTAAGGATGTAGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGATGCTGCTCAGAGGCGCTTGTACAGGGATGTGATGTTGGAGAACTATAGCCACTTGGTTTCTCTTG
Seq A exon
GTAAGGACCACATCTTCTTGTCTATGTATTGGCAGGTCTTCCCTTTCTCAGAAGATCAGGTTGTGGGGCTCATAGTTTGGGTGACTGTGAGCAGGGTGTTCAGGGTTAGAGTTTGTTCATCTTGTTGAGACCCAGCTTTATGGGTTTCTGAGCCTGCTTTTTAGGTAAATAGGAACCAGAAATAGGCCATTTGATTGCATGACTCCTCAAATTGCACCTTTTTTTTTCCCTTCAGAGTTGCTGAGGATAAGTCCTAGTTCTGACTTTTAGAGGGTTCTTTTGTCAACTTGCATAAACAACCAAATCTTATGTGTTTACCTGTGAGCAG
Seq C2 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAACCATGGATAGCAGAGGGAGAAATCCAAAGACCTGTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007488:ENSBTAT00000032517:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACTGACATTTAAGGATGTAGCT
R:
CTGGACAGACAGGTCTTTGGA
Band lengths:
222-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development