MmuINT0180038 @ mm9
Intron Retention
Gene
ENSMUSG00000031907 | Zfp90
Description
zinc finger protein 90 [Source:MGI Symbol;Acc:MGI:104786]
Coordinates
chr8:108942971-108943510:+
Coord C1 exon
chr8:108942971-108943097
Coord A exon
chr8:108943098-108943414
Coord C2 exon
chr8:108943415-108943510
Length
317 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
GTGTGTTTACCCATGAGCAGGGT
3' ss Score
4.04
Exon sequences
Seq C1 exon
GAGTCGGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGGCCCTGCCCAGAGGAGCTTATACAGGGATGTCATGCTGGAGAACTACAACCACCTGGTGTCGCTCG
Seq A exon
GTAAGGAGGGCCACCCCTGCTCAGTGTCTCACATAGTCCTGAATTTTCCTTCCTCGGTGGCACACAGCCTAGATAGAAAGATGGAAGCCCAAAGCTTGGTTGGGGCCTGTTTTGGGGAGCCAGCTTTCCTGGGCTTTGAGCCTGAAAGATCCTTATTTTACAGAGCTAGGAAAGGGGGCTTTGCTAGTGTGTCTCCTTAAGTTGCGCCTTTTCTTTTCTTCAGAGTTCCTGAGGATCAAGGACTAGTACTGACTTATAGGAGGGTCCTTTGTCTGCTTGCTCAAACACCCAAATCTTGTGTGTTTACCCATGAGCAG
Seq C2 exon
GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAAAGAAATCCAAAGACCTTTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031907-Zfp90:NM_011764:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGGTGACATTCAAAGATGTGG
R:
CTGGACAGAAAGGTCTTTGGA
Band lengths:
222-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: