HsaALTA1050981-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000184939 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr16:68557998-68558514:+
Coord C1 exon
chr16:68557998-68558124
Coord A exon
chr16:68558375-68558472
Coord C2 exon
chr16:68558473-68558514
Length
98 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GCACCTTTTTTTTCCTTCAGAGT
3' ss Score
10.09
Exon sequences
Seq C1 exon
GAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCACCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTATAGCCACCTGGTTTCTCTTG
Seq A exon
AGTTCCTGAGGATCAAGGACTAGTACTGACTTGTCCTTAGGAGGGTTCTTTGTCCACTTGCACAAACAACCAAATCTTGTGTATTTACCCATGAGCAG
Seq C2 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939-17-23,17-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCAGTGACATTCAAAGATGTGT
R:
TCCAATTTGAAGATCACCTCTGGC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains