HsaALTA1050981-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000184939 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr16:68557998-68558514:+
Coord C1 exon
chr16:68557998-68558124
Coord A exon
NA
Coord C2 exon
chr16:68558473-68558514
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GTGTATTTACCCATGAGCAGGAT
3' ss Score
4.08
Exon sequences
Seq C1 exon
GAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCACCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTATAGCCACCTGGTTTCTCTTG
Seq A exon
NA
Seq C2 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939-17-23,17-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCAGTGACATTCAAAGATGTGT
R:
TCCAATTTGAAGATCACCTCTGGC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains