MmuEX6038183 @ mm10
Exon Skipping
Gene
ENSMUSG00000031907 | Zfp90
Description
zinc finger protein 90 [Source:MGI Symbol;Acc:MGI:104786]
Coordinates
chr8:106415327-106419610:+
Coord C1 exon
chr8:106415327-106415770
Coord A exon
chr8:106419071-106419197
Coord C2 exon
chr8:106419421-106419610
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGGCTGTGATCCCACAGGAG
3' ss Score
5.43
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GCAGTCGCACTCGTGGCTCTGCGCCCGCCGCTGTGGCCATTGTCCGACCCTGTTGTTGCAGAGCAGTACTGCCGGGAACAAGAAACTGCAGCGGGCGCTAGAGGGGCGGACCTGAGGTCGCGGATTCCGAAGCCCCGGAGGCAGATTCCGAGTGCAGTGGGTAGGAGGCTGTCCTCCGGGCCTCGCCGACCATCCTGCGGACGGACTGGGCGTGGCCGGAGGAACTGTCCCGAAGCTGTGGGGCCTTTCATTTGGCCTTGGGAAGAGCAGCAGGAGAAGGCGGGGCTCCTCCCCACGTTTCGGCCGAAGTGGCTGCAGAGCTGAAGGGGTGGGGCCTCGGGGTAGCCCGGTGAGTGGATCCTGTCCTCTCTCCTCAGCCCTGGACCATAGCCAGCACACACTGAGGCAGGAATGGCCCCGAGACCTCCGACGGCCAAGCCCCAG
Seq A exon
GAGTCGGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGGCCCTGCCCAGAGGAGCTTATACAGGGATGTCATGCTGGAGAACTACAACCACCTGGTGTCGCTCG
Seq C2 exon
AGTTCCTGAGGATCAAGGACTAGTACTGACTTATAGGAGGGTCCTTTGTCTGCTTGCTCAAACACCCAAATCTTGTGTGTTTACCCATGAGCAGGGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAAAGAAATCCAAAGACCTTTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031907-'2-3,'2-2,4-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.076 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGCCTTGGGAAGAGCAG
R:
CAAGCAGACAAAGGACCCTCC
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types