BtaEX6081120 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007488 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr18:36008479-36023745:+
Coord C1 exon
chr18:36008479-36008547
Coord A exon
chr18:36023195-36023321
Coord C2 exon
chr18:36023650-36023745
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAAGAATGTGTTCCTACAGGAA
3' ss Score
6.1
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACCCTGTCCCTGGGAGCCCTGCCCGGCGACCCAGGGATGGCCCCGAGGCCTCCGACGGCCAGGCACCAG
Seq A exon
GAATCACTGACATTTAAGGATGTAGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGATGCTGCTCAGAGGCGCTTGTACAGGGATGTGATGTTGGAGAACTATAGCCACTTGGTTTCTCTTG
Seq C2 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAACCATGGATAGCAGAGGGAGAAATCCAAAGACCTGTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007488-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.023 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCTGGGAGCCCTG
R:
CTGGACAGACAGGTCTTTGGA
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]