HsaEX0072677 @ hg19
Exon Skipping
Gene
ENSG00000184939 | ZFP90
Description
zinc finger protein 90 homolog (mouse) [Source:HGNC Symbol;Acc:23329]
Coordinates
chr16:68573661-68592417:+
Coord C1 exon
chr16:68573661-68573728
Coord A exon
chr16:68591901-68592027
Coord C2 exon
chr16:68592376-68592417
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACAGGAATGTGATTTTACAGGAA
3' ss Score
5.46
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
CTCCTGCCCCGGAGCCGGGCCCTGGCGAGGCAGGAATGGCCCCGAGGCCTCCGACCGCCGCGCCCCAG
Seq A exon
GAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCACCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTATAGCCACCTGGTTTCTCTTG
Seq C2 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.093 C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(4.2=9.1)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCGAGGCAGGAATG
R:
GCTCCAATTTGAAGATCACCTCTG
Band lengths:
90-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)