HsaEX0072677 @ hg38
Exon Skipping
Gene
ENSG00000184939 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr16:68539758-68558514:+
Coord C1 exon
chr16:68539758-68539825
Coord A exon
chr16:68557998-68558124
Coord C2 exon
chr16:68558473-68558514
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACAGGAATGTGATTTTACAGGAA
3' ss Score
5.46
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
CTCCTGCCCCGGAGCCGGGCCCTGGCGAGGCAGGAATGGCCCCGAGGCCTCCGACCGCCGCGCCCCAG
Seq A exon
GAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCACCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTATAGCCACCTGGTTTCTCTTG
Seq C2 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939-'7-23,'7-20,17-23
Average complexity
C2
Mappability confidence:
87%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.063 C2=0.023
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(4.2=9.1)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCGAGGCAGGAATG
R:
GCTCCAATTTGAAGATCACCTCTG
Band lengths:
90-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development