HsaINT1047288 @ hg38
Intron Retention
Gene
ENSG00000164631 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]
Coordinates
chr7:6688433-6697434:-
Coord C1 exon
chr7:6697339-6697434
Coord A exon
chr7:6692704-6697338
Coord C2 exon
chr7:6688433-6692703
Length
4635 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTAATTTTGTCTCTCTTTAGATG
3' ss Score
11.32
Exon sequences
Seq C1 exon
GGTATCACATTATCAAACCGGATGTTATCAGCAAGTTGGAGCAAGGAGAAGAGCCATGGATAGTAGAAGGAGAATTCCTACTTCAGAGCTATCCAG
Seq A exon
GTGTGTTAGTGGAGGCAGTGAGGAGATCGGTAACTTGGGAGTGTTTTTCCCAGGGATTTTTTAATGGTCCCGAACCTTTAGAAGTGACTAGAAATAGTTGCTTATATGCTCTATGAACCTGAATCTCACTCCCAAAGACTTCTTCCTTCCCCGTAAGAACTTATGTTTATGGAGCTTTTCTGTGCTTGCCACTCCCAAGAATCGAATTCCAGTCACTTCTGTTGTTCTCTTAAACTTTGGGTCTTTGCTTGCTCTTCTAGCATTTTCAGAAACCATTATCATGGATTTTTTAGGTGTTATAAGTCTGACATTTAAAAATAACTTATGTGATTCTTGTGTTCTTCGTGTAACTTCTGGTTTTTTTTTTTTAATCTTTACCGTGCAGTGCCTGAGACTGTTTCTGGACCCTGTTCTACTTTGTACTTTTCTTTCTTTGAGGTTAGACTCCAAAGTTCCCATCCTGTGCCTAAGCCAGTGGATCCTGCTACTTGTCATGTGCACCTGTGCTTCATTGGACAGTGCTGCTCATTCCTGAGACCCAGCCCTCCTGAAATTTGGTGACTGCAGTACCTGGGTCTCCCTCTTTAACCAAATGCTCGTTTTCATCTTGTTTCTTATTTTCTGTTCTGTTCCCAATGCCTTGAATGATACCCTGTCATGGCAGGTGCTTAGTAAGTATCATATACGCAAATGAAGTCTGGTTTATGCTTCCACCACCTCCAGAAATGTCTTTAAAGGGTCTGTTTCTACCTACTGTGATTTCCTCGCATTATGAGTTTCTCAAAGGGTGCCTCCAGTGCCAAGTCTTTAGGCTTTGTTTTTTATTTTATGTTGCTCGCACCCAGGATGACATCTCTACCACCATTGAGCCTGGGCTCTAGTCTGGTATTTTCTGTGATACCAGTTACAGAGCTGCTCTTGTTCTCATCAGGCCTGGAAATTGATCATGACCTATTCCAAATTATAATTACTAATCACCTTTCCACCTCCCTTTATTTACTAAACTATACTAATCTCTTCTTCTTCTATAGTGGTCCCTGTGAAACCACTGAAATTCTCATCAGATATTACTGATCTCTCTGGATTACTGGATTTTGTCCAGTGTGAAATGTCTTCATTGTCCTCTGTATATCCTCAGTTTCCTTTGACTTAATGTAAACAAAGACTAGATGCTGTCATGCTATGAGTCCTAGCTGGATTTGCAGTATGTCTTCATCTAAAGTTTCCAGTTGATATCATCGCTAGCCTCACAAGATAAGCCTATAGTTGGTTACATTTTACTTCCTAAAGGGAATTTTAATTCCTTGTCCCTTAAGGATCTCAACAATATTAGGCCTGTATTACCTGGAAAAAGTAATTTTCTGTTGTTTCCCCAAAACTCTGACTAAACTCCGTTTGGTTCACACTCCTAATGTCTTCTCTTCATGATACTATTGTCCCTACAGCTTTACATTTCATTAGGGTGTGCTTTCCTTCCCCACATAACACATTCTTTAAGTCTGACCTCAAATCTTCAACCCCTCCCTGACTTTTGTCATGACTTCTGTATCTCCCTTCCCTCGACTTCAGTTTCACCTAGGGGTGATAGGATAAAGAAGTGACTCTGATTAAGTAATCTGTTATTCGATAGTGTCTATATTTTGCTTGAGCTGTTTTGCTCTTGGATCATAGTCCTGTAAGGAAAGGGGCATGTTATCCCTTGATGTAGTGTGTAACAGAGAGAGATATTTCTTTCTTTCTTTGATTATCTGAGAAGCTAGGCAGGTGAAAGAACTTTCTTGTCCATCCATTCAGAAATAATTTACAGGCAGTTACTTCTAAATATGCATGCCTGGGCCAAATGTGGTGGCTCACACCTGTAATCCCAACCCTGGGAAGCTGAGGCAGGAGGATTGCTTGCAACCAGCCTGGGTAACATAGTGAAACCCTGTCTCTACAAAAAAAAGAAAAAAGAAATAATGCATGCCTGGGTCACATCCCCATATATTTTGCAAGTAGTGGAAAAATACCTATATGATTCAGATTAAGAACAGCTTCTCTGATTTTTATTCAGAGGTTCAAAGGAAATAGGAAATAGGACCATCCTTCCTAGGAGAAAGGTTGTGGTTAGGAAAAGAGAACAAGGGCTGGGCGTGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGACACTCTGTCTCTACTAAACAATTAGCCAGGCCTGGTGGCGCATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCCCTTGAACCTGGGAGGCAGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAGAGAACAGCGCTGCATGAAGTAATTAAAACTCAGCATTTTACATGGAGTGCTGATGTTCCAATGCAAGGCTGAGTCACTTTGTATTAAAATGATTCTATAGACAGTATTCTCAACTTCAAGGGGAAATGGAATTGAGGTGAGAAAGGATTTGAGAAGTATTTTTTTCAAGCATGGAAATCCCCTACAAAGGTAGGTTTTGAGAAGATGAAGGCAGGAAGTCAAGCAAACTGAGTGAAACAATAAGGGTGGAGACTGTAGGTGAAATGTGCTGGGCATTGATCAGGCACACAGTGATCGTAGCATAAGGCAAGGATAAGAGATAGATCATGACCTATCTCTCCCAGCTTGATGTGACATGAGAAGGTGTAAAGTGCAGACCCACTTCCTCCAGAACAACTCTCTACTTGGACTTATCTTAGGAACCTCCTTGTGCAACAAATAGCTTGCTTTTCCTGCAACGGAATATTTTTGTTAGATGACTGTCATCCTAGCTTGGCAGCATATAGTGATCCCAGGTGGTGAAAAGTATTGTCTCTCAGATTTTTTTCTCATTTGATCTGTTGATATTTTGGCAGTGGGTTCAGGGAAAGCACAGGTTATAGGGGTTACGGTTGATATCGTTTCACTTAATGTGCATGATAGCAAGTACAGTAGTCAGGTTCATCCAGACACTTCTAAGGTAAGTAAAAATAAAATTGTTATTTTAGGAGCATGGTAAGGGATCTGATTTTGTTTGTTTGTTTTGTTTGTTTTGTTTTTTTTTTTGAGACAGATTCTCACTCTGTCACCCAGGCTGGGGTGCAGTGACACAATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCCAAGTAGTTGGGATCACAGGTGCCCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGCAGGGTTTCACCATCATGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACCACGCCCGGCCAGGGATCTGATTTGTAAGGTTTGTACACTAAATGCTACTCAGGAGTGGGAAAGCACTCACACTGAGAATTAAGTGATGGTAGTATGTCAGGGTGGGTCTGGCTTAAGCAAATGGTCAGGAGATTGAAAGATGGGAAGAATAATTGCTAAGCTTATCAAGCATGTGTTTTGTGCCAGATGCTGCTCTGAGCACTGCATTAACTGCTGCAATCCTACAACCACCTTATGAGGTAGGTGCCATTATCTCCATTTGGCAGATGAAGGATACTGACTACAGAGAATTGCTAAGTAGCTTGCCCTAGGTCACCTCACCAGAATTCATGCTATTAAATATACTGTTCAAATAGGAACAAGTAGAATTTCATGGTCAGAATGAGTTTAGCATTAAATCATAGCATCATTAGAATACTGAAGTTTCCAGTTGATCTCATCGCTATCCTCACAAGATAAGCCTATAGCTCTGTGGACTATTTTATATTTCCTGTAGGATATATATATACATTCCTGGGATTCTTCATCCAAGTGAAACAGAATTACAGGGCGAATGCCCTGGTTATAGGGCTGTTCCTTTAAACATGAGGAGATTTAGTTTATTCTACTATGTGGAATGAGGAAAGAAGGCAAAATAGTTTGGAAGGATGTAGTCTAGTGAAAATGCTACCACAAAAATCTTAGTATACAGTGCTAATGCCTTAAATTGTAATCTCTCTCAACTTGGTATGAAGTGATGTGGTATAAAGTACAGCTTTACCTCCCCCTAAATGAATCCCTAATTGAATACATCTTATGACCCTCCTTGTCCAACAGCACTCCTTATCGCTCTACCCTGTCAGCCATTCATCCTGCATTCTTCGCCTACCAGTCATTGTTCTGTGTTATATTTTATCTTCTATTCCCAGTTTTGAACAAAATATAAAGTAGATCAAAAGTGCATGTGTTTTTGTCAGTTTACTTCCCCCTTTCTCCATTCCTAGAGGGGGATGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTAATTTTAAGCAAAAGCATAAAGGAGAAGAGTACACTTGGAATTATTTTCATCTGTTCATGAAGCTAGCATCTACTCACAATGAGATGCGTGTGTACAAATCATGAATCTCATTCCATATCATATATATATAGGAAGATGTACAAAAGTTTATTAATTTTGTCTCTCTTTAG
Seq C2 exon
ATGAAGTCTGGCAAACTGATGACCTAATAGAGAGAATCCAGGAAGAGGAAAATAAACCTTCAAGGCAAACTGTGTTCATTGAGACCCTGATTGAAGAGAGAGGTAATGTTCCTGGTAAAACTTTTGATGTAGAAACGAACCCTGTTCCTTCAAGAAAAATAGCCTATAAAAATAGCCTCTGTGACTCATGTGAAAAGTGTTTAACGTCTGTTTCAGAATATATTAGTAGTGATGGAAGCTATGCAAGAATGAAAGCTGATGAATGTAGTGGATGTGGGAAATCACTCCTCCATATTAAGCTTGAGAAAACTCATCCAGGAGATCAAGCTTATGAATTTAATCAAAATGGGGAACCTTATACTCTAAATGAAGAAAGTCTTTATCAGAAAATTCGTATTTTGGAGAAACCTTTTGAATATATTGAATGCCAGAAAGCCTTCCAAAAGGACACTGTTTTTGTTAATCACATGGAAGAAAAGCCCTATAAGTGGAATGGATCTGAAATAGCCTTTCTCCAGATGTCGGACCTCACTGTACATCAGACATCTCATATGGAAATGAAGCCCTATGAATGCAGTGAATGTGGGAAATCCTTCTGTAAAAAGTCAAAATTTATTATACATCAGAGGACTCACACAGGAGAGAAACCTTACGAATGTAATCAGTGTGGGAAATCCTTCTGCCAGAAGGGAACCCTTACTGTGCATCAGAGAACACACACAGGGGAGAAGCCCTATGAATGTAATGAATGTGGGAAGAACTTTTACCAGAAGTTACACCTCATTCAGCATCAGAGAACTCACTCAGGAGAGAAGCCCTATGAATGTAGTTATTGTGGAAAATCCTTTTGCCAGAAGACACACCTCACACAACATCAGAGAACACATTCAGGAGAGAGACCTTATGTTTGTCATGACTGTGGGAAAACCTTCTCGCAGAAGTCAGCACTTAATGACCATCAGAAAATTCACACAGGTGTGAAACTCTACAAGTGTAGTGAATGTGGGAAATGCTTCTGCCGCAAGTCTACTCTCACGACCCACCTGAGGACCCACACAGGAGAGAAACCGTATGAATGTAATGAGTGTGGAAAATTCTTCTCTCGGTTGTCATATCTCACTGTACATTATAGAACTCATTCAGGAGAGAAACCCTATGAATGTAATGAATGTGGAAAAACCTTCTACCTGAATTCAGCCCTCATGAGACATCAGAGAGTGCACACAGGAGAGAAACCTTACGAATGTAATGAATGTGGAAAGTTATTCTCCCAGTTGTCATACCTCACTATCCATCATAGAACTCATTCAGGAGTAAAACCCTATGAATGTAGTGAATGTGGGAAAACCTTCTACCAGAACTCAGCCCTTTGTAGACATCGGAGAATACACAAAGGAGAGAAGCCCTATGAATGCTATATATGTGGAAAATTCTTCTCTCAGATGTCATACCTCACTATACATCATAGAATTCATTCAGGAGAGAAGCCCTATGAATGTAGTGAATGTGGGAAAACCTTCTGCCAGAATTCAGCCCTTAATCGACATCAGAGAACACACACAGGAGAGAAAGCCTACGAATGTTATGAATGTGGGAAGTGCTTCTCTCAGATGTCCTATCTCACTATACATCATCGAATTCATTCAGGAGAGAAACCCTTTGAATGTAATGAGTGTGGAAAAGCCTTCTCTCGGATGTCATACCTCACTGTACATTATAGAACTCATTCAGGAGAGAAACCCTATGAGTGTACTGAATGTGGAAAAAAATTCTACCACAAATCAGCATTCAACAGCCATCAGAGAATTCATAGGAGAGGCAATATGAATGTAATAGATGTGGGAAGGCTTCTCTGAAGTCAGACCTCATTTTATATCAGAGAACCCTTTCAGTATAGTGAATCAGAAACTCCTGCCTGAAGTCAAACACCTTGTACATCAGAGAGTTCACACAGGTTAGTGTGGACATCCCCTTGTGTGTTGGACTCATAATCTGAAGACTCACAGAATGGAAACCATGATTATAACAAGACCACATGGTATAACAATACTAGACTATAGACAAGTAAAAATTTATAAATATTAAGAATGTATATACATGTCACCATGGATTGGAACTGTTTTGCATATCAGGGAAATCATAGCCAAGGGGAAATCTATCAGTATAAGGAATGTGGAAGACATAATCCTTTGGAAACTGTTAATACTAAAAGATATGTTTCTGATACAATAGCAAACTTGAAAAAAAAAAAAGAAATAGAAGATTCCTGCTGTGAATAAACATACTTCTTGTGTAAATAGAAACTGTAAAGTCATCAGGATAGCTAGTTAAGTCGGTAACCTTAAACTCATGTAAGCAGTTCCCAAAGAACATAGGACTTATGTTTGGGGAGAGGGTTGTTTTTATTACAGTACATTACAGGAATTGTATGTTCACTTCGAATCATGTTTGAAAAAACGTTGTATCCTTATTTTGTAATTCATATAGTAAGAGTATTCTAAACAGCACTACATTAATATCATTTGATAGGTATAAAGTATACTTTTTCTTGCACTCTTCTCTAGGATTTAATGCATTGATCATTCTTAATGAACAATATCAGCTCTAAAGGACCAATGCTTTTATAATGTTTTCAACTGTATCTGAGTCAGCCAGAGAGATAAATATCCATGTATAAAATAGATAGAAAACTTTGCTTGGTAATTTAAAATTAATAATGCCAGTTTTCCAAGAGTGAGAAAATCATTGCACTCTATACAGTTTTAAGATATACTTAAAATATTCCCATTTGTATCTATTTTTTTTTCTACTGTTTTTTATTTGGACACTTACATAACAGTGCAGAGCACAATGCTGTGTAACATAGGAATTCACTGTGTTTTCATTTGATGTCGTACTGGTTTTAAACCTTGTGCTCTACTCCTTCCTGTTAATGAATTAAGAACACATTCTAACAAGGGTCTGTGGCAGACATTGCCGAGTGACTTTCTAACATAGGAATTCACTGTGTTTTCATTTGATGTCGTACTGGTTTTAAACCTTGTGCTCTACTCCTTCCTGTTAATGAATTAAGAACACATTCTAACAAGGGTCTGTGGCAGACATTGCCGAGTGACTTTCTTAGTCACTCCCTTACTCTGCTGGCGGAGTTTGGTTATCCATTTATCCTCAAAAGGAAGTGAGATAAATCCTGATTAGTTTTAACCAGTGACACTCCCCTTCTCGTTGCCAGCAGTTGATTTACAGTGGTCACAGGGCCCAATTCTAGACATAAAACAAAGGATATACCTGACAGACTACTTCTGGAAAAGGTTTTCTCAAAGGCCCAAGGATTCAAGCAAAGGGAAGTGGAATCTTGTGGTGAACAGTACCTTGTCTGGATGTGGTGCCTGGTAACCATCTTTCAGCAATGGATTATAGTTTAATCATGGCCTGAGCAGAAATACTGAAAGACCCTGAGACCTGGATGATGTCTTTGAGCCACCAAACCAAGCAGCCTTGTAGCCACTCCTCCTTTGGACTGTTTCTTTTGTGAGAGACTAAACTTATTTTTAAGCCAGTTGATTTAGGATGCTCTATTACTAATAACTGAAGACATTCTAATTGGTACAGACTGAAACCTTTATAGGAGTTATGCAGTTCAGAAGTGGACTTTAGGTAAGTCATTTATTTTAAGCTGTTGATATAGAGATTTATTTTCTGTAAATTTTGACGTAAATAGTTTGAGCATTAGAAATCAACTTGAAACAATAAAATGTATGCTTCCTTGAACTGTCATATCGTTGACCTGCAAAATTCACCTTTGGAACGTGACACAATGTTAGGCATACCTCCTTTTTTCTAATACATGGAATACATTTTGTTGGAGGTAATTTATGTGATTCATATACCACTGCTACAGTGTTAGCTGACAACATATAGTATGAGGTAAGGATCTAATTCTGTTTCCTCTCACATGATTACTTGATAGCTAAGCATCTGATTGGTTTACTGCTTTACCACTGAGCTGAAATGCCGTGTTTTCCATTTATTAAAATCACACATGGCTCCTGTTTTTGTCACTCAGCACTTTTTCTCCATATTCTTCAAGACGATTGTGAGTATGGTACGTAACAGGAATTACATCTGGTAAGTTGTATAGTTTTGTGTAGGAACTCTATATTCATAGCATATTTGTGGAAATGATACCTATGGAGGTTTCTCACACTGGTGTGTCATTATACATTAATTGTACAATATGCATTTTCAGTAAAATATTTGAAAACTGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164631:ENST00000405858:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains