HsaINT1047338 @ hg38
Intron Retention
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:HGNC:13019]
Coordinates
chr19:44165164-44165807:+
Coord C1 exon
chr19:44165164-44165246
Coord A exon
chr19:44165247-44165756
Coord C2 exon
chr19:44165757-44165807
Length
510 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGA
5' ss Score
3.11
3' ss Seq
AGCCTGTTTTTCTTCCCCAGCCC
3' ss Score
8.51
Exon sequences
Seq C1 exon
CAAACTTCCCCGAAATGCACTTGTGGTCAGCAGCTAGCGGTCTTTTGTTTGGGGAAAAAAAGGAGTAGCGGCTAAGAGCGGAG
Seq A exon
GTTTGAGGGGCCAGGATGCTGTTTTGCGTTTCCCTGGGCGGAGCTTGTTAGAATTGGGGGCGTACTGGCTTCGGGCGGCTGGGGTGATGCTTCGTCGGGTTTGAAGGTCTCTCGGGCTGTTCGCTCCCTCATTGTGACTCCCCCACCTAATGAGCCAGCCCTACCACTTCATACAGTATCACATTGAGCGAGTTAGTTAATCCCCGTGCCTTCGTTTGCTGTTCTGAAGGAAAATAAAAGCAAAAACTTCCTAATAGAATGTTTTGAGAGAAAACGAGGTAATACAAAAAGTGTAAAACTGCCTGGCACGTGAATTACCAATACTACTGTAATTTTCCTAGAAACTCCCGTTCTGTGGCGAAATTCTGTGAGTCCATGAAGCTGGATTGTCCCTGACCTCTTTTGAGGAAGGAGAGGGTTGCTTCTAACTGGTCCTGGGAGATGCCACTGTGATGTATCCGGGATGAAGACACAATCCTGGTTACTTCATAGCCTGTTTTTCTTCCCCAG
Seq C2 exon
CCCTGACTTCTCAAAAAGCACTGCACAGAGGAGGAGGCAGCAGAACCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380:ENST00000454662:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains