MmuINT0179566 @ mm10
Intron Retention
Gene
ENSMUSG00000050605 | Zfp61
Description
zinc finger protein 61 [Source:MGI Symbol;Acc:MGI:99663]
Coordinates
chr7:24298274-24299675:-
Coord C1 exon
chr7:24299193-24299675
Coord A exon
chr7:24298376-24299192
Coord C2 exon
chr7:24298274-24298375
Length
817 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AATTTTTGGTTTCCCTGCAGCCC
3' ss Score
9.28
Exon sequences
Seq C1 exon
AGTGCTCGAGGACGCCACGAGAGAGCGACGGGTCCTCCGGAGCTGGAGCAACTACGGTTTTGAGCTCCGCAGTTAGTAGCGCTCTCCGCACCACGTCATCTCTCCAGCGCCAAAGCCTATACGTCCTAAGGCAGACATCCTCCAATGTAAAGACGTTGCTGTCCAAGACTTTCTTAGGGAGTATGGGAAATGAAAAACAACAGGGAAATCCAATACGGGAGGATGGTGCTCCTCCCCTAGCTTCGGGACCGGCCACCCGCGCCTCTGCATCCTCACTTCCGTTACCACTGAGGGAGCCGAGCGTCACGCACGGTTTCTCCACGCGGAATTCTGGGAACTCGTCGGCTTCAGGCTAGCCTGTAGCCATCTGTCCCCCTGGATTTGAGTTATTTTAGCCAGGAACCTCCAGAATGACCCGCTAGATGCTTCTGAGATCGACAGCAATTGCGTCTCGGGTGAAAAGGAAGGAGCGAGGTTTGAAAG
Seq A exon
GTAAGGAGCAGCGGCGAGCTCCGGAGGGAGCGTCCTGGTGCCTGCAGGCCCTCGGCGCGAGCGGCTTCTGCAGTGCCCCCGCCCCGCCCCGTCCCCGCAGCCCCCTCTCCCTGCCTGCAGCCCTCTCTCTCCCATTCCGCAGCTCCCCTCCCCTCCTGCCCGCAGCCCTCTCCTGCCTTCAATCTCCTTCTCTGGTCCTGCAGCCCTTTCTTGCAACCCACTCTCCCTGCCCTCAGACCCCCTCTTCCGGCCCGCAGCAGCCCTCCCGCCTGCAGCAGCCCTCCCCTTCTGCAGTTTCCCTCTCCCCTCGTTACCCCCCTCCCTCCCTGCAGCCCTCTTTTCCTCTCTGAAGCCCCCTCTCCCTTCCTGTAGTCCCCCTCACTCCTGCAGCCACCTCCCTCCTGCAGCCCCCCTCTCCGCCTGCGGCCACCGCTCCCCTTCTGCAGCTCCCTCCCTGCTCCCGCGGCGCCCACCTTCTCCACCCCCTAGTCGGCTCTGCTTCTGCCCCTGCCGCACTAGCAGATCTCTCTGTGCATATCTTGGGTGTTCTGCAAAAGACAGACATTAGACCTTCCTAGTAGCATACTTGGAGAGAAAAAAAAAAAAAAAAGGATGGTGAAACACTCAAAACTGCCTGGCATGCAGGTCTCATGGAGAGACCATAGTAATACTTCATCCAGTTCTTGGCCGTCACAGTTGTGACCCATCTATGACCTTTAGAGGAAGGAGCTGGCTGCTTGCAGCAGGTACTGGGGCAGGAACTGTGAGATGTAATGTAGGGAATTTTATAATTTTACAATTTTTGGTTTCCCTGCAG
Seq C2 exon
CCCTGACTTCCCAAAAAGCAGTGCTGGAAGCCATAAGTGACTAAGATTGGCTGACGCTGGAGGATGTGTGGGTCGTACACCTGGGATTAACTTTTATTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050605:ENSMUST00000077780:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATACGGGAGGATGGTGCTC
R:
TACGACCCACACATCCTCCAG
Band lengths:
350-1167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types