HsaINT1047367 @ hg38
Intron Retention
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:HGNC:13089]
Coordinates
chr7:100079536-100081740:-
Coord C1 exon
chr7:100081635-100081740
Coord A exon
chr7:100079657-100081634
Coord C2 exon
chr7:100079536-100079656
Length
1978 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTTTCCCCTTAATCACACAGCAT
3' ss Score
6.37
Exon sequences
Seq C1 exon
GGGAACTTCCGTTCTTTGTTCTGTCCCCGGTGTGTGGGTCTGTGACAGGGTCCAACAGGGCCTGGTCCGTGTCCGGTCCCCCAAATCTGTCGTCCCTGCCCCCAGG
Seq A exon
GTGAGTCCACGCGTCCCCGGGTCTCGCGGTGAGACGGAGGCTGTGGTCGCCGGGGAAGGGGGTGGTGTCTGTGCCACTGCGGCCCGCAGGGTCCCCCGGCCGGCCCGGAGCAGGGTTCGGGGAGGCGCCCCTCCGTCCCCTGCAGCCCGTCCTCTACTCCGCTTCCCCAGGGATCCCCCTAGCCTAGCGGGATCCTGCGTAGGGGTTAGTAATGGGGCTCCGGTTCTGGTTTTGTGACTTTAACGGCGACCCAGCTGGAGCGTTTAAAAGTTTCAGCAGAGCGGTAGGGGCGCCTCTCTCTTGAAAGCAGCTAATGACAGCGACCCTAACTTGGTATTTCTCCCAGACGTTTTTATTTGATGTTAACACAGTTATTCGCGCCCGTGGCAGGAGAGGAAGTTTATTTTTACGCAGCTGGGTCCAAGGATCAGAGAAATTCTGCTAAGCGTACGCAGTTAGCACGAGGGCTGGGAGTGGGTGCAGACGCCGATTCCAGGGGTAATCCTGCTGGAGCCCAGTGCATCGCGTGATACACCTGGCTCAGGCTCCGTTTTCAGTTGTATTAGATTCCTGGTTTGATCCTCTCTCCGGAAGTGGGATTGAATCCACATCGGTGTTTACACTCTGAAGGGCTTTTGTAAACTCCAGGAGAAGATAGCAGAGTGATGAACCTGAAACCGATGGGCTAATTAGAGGAACGAGCGTATTATTTTCTCCAGAAAAGACATCTGTGGAGAGTGGGCATCATTTGATTATACGTGTTTGATGGACAGTCGGGTGGAAGGAGAAGATTCTGTTATTGAAGCTCTTTTTTTAAAAAAATTAATTTTTATTTATTTTTGAGACTGTCTCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGTTCAAGCGCTTCTCCTGCTTCAGCCTCCCGAGTGGTTGGGACTACAGGCGCCCGCCACCACCTCCGGCGAATTTTTTGTATTTTTAGTAGAGACGGGGTTCCGCCCTTTTGGCCAGGCTGGTCTGCAACTCCTGGCCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTTAGCCACCGCGCCCGGCCTTTTTTTTTTTTTTCCTTTTAAAATGTTTGTGTGTGTATTAAGGTCTTGCTCTGTTGCCCCCGGCTGGAGTGCCGTGGTGCCATCATGGCTCACCATAGCCTGGAACTCCTGGGCTCAAGTAATCCTCCCACCTCAGCCTCCTAAAGTGCTGGGGTTACAGGCGTGAGCCACTGCAGGTCGCCAGTCATTGAATTTCTGTGATGCACTAGGTCTCTGTGCGGTGAAGGTCCAAGGAGATAGATTTTCAGCGAATCACCTGAAGACTTCTAATGGCTCAGCTGTGCAATGTGGATCCCCTGCTGAAGTAGTTCGGAGCACAGTGTCTAGCAAGTTAGCTGACAGAACGTTAGAACTTTCTTACCCTGGGTGGAGGTGGACCTGAGAACCTACCATTCCCTTTCATCTCTCCACGGGTGCAACGCAAATACTAGTTGTGGTGGTGGTCTTAATTGGTATTTATTAGCATATAATAAGTATTCTCTTTTTTTTCCTTTTCTTTAAATGTCTTGATTAGAAATGAAGTTTAGGCTGGACTCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGAATCACTTGAGGCCAGGAGATTGAGACCAGCCTGAGCAACACAGTGAGGCTGCATTTCTACAAAAAGAATTTTAAAAAACTCAGCCAGATGTGGCAGTGCACACCTTTAGTCCCAGCTCCTTGGGAGGCTGAGCTGGGAGGATCACTTGAACTTAGGAGTTTGAGTCTGGAGTGAGCTCAAACTCACTGCACTCCAGCCTGAGCAGCAGAGTCAGACCCTGTCTCATGGAAAAAAAAAGACGTTTGCATGAATATTTTAAATTCCTTTTTTTCCCCTTAATCACACAG
Seq C2 exon
CATTGGCATCAACAAAAGTCAGAATTCCCGGGAACTTGAACAGAGGCTGCTAAATTCCCAGTAATTGCTCCTTTGGCCTTCTAGGGACTGACTTCAAAGAAGGAAGGAAAGAATCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526:ENST00000299667:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCGTTCTTTGTTCTGTCCC
R:
TGCCTGATTCTTTCCTTCCTTCT
Band lengths:
222-2200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains