HsaINT1047378 @ hg38
Intron Retention
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr6:28999487-29000047:-
Coord C1 exon
chr6:28999956-29000047
Coord A exon
chr6:28999614-28999955
Coord C2 exon
chr6:28999487-28999613
Length
342 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
GCAGGAGCATATTATTTCAGGAG
3' ss Score
-0.74
Exon sequences
Seq C1 exon
CTCTATTACCTGCTCCATATCCTGCCTTCACTAAAGATGGAAGCCAAGGAAACCTGCCGCAAGCAGATATCACACTAATGAGCCAGGCCCAA
Seq A exon
GTGAGCTGAGGCCCCTTTCCTCCTCCTTGAAAATACATCACTACCTCCAAAATATGGCCTTGTTTTCACTGCGTTCTCTGGCTGTGCAACTCCTAAATCAATGTTCTCCCTCTCATAAGGAACATTTTGTTGCATGATAAACCACTTGTGGGTTGTTTTCTCTTTCATTATTTTTTGCTATCAAAACCCCATGCTCCCTTTCATCTCATTTGTACATACCCACCAAAAGGGAAGAGCCTTTCACTTCTATAAACCTCCTCCTTGCAAATTCCTTTCTTCTGCCTCTGTTTCCTGAGGAAACTATGGCGTTTTCTCCAGGATAGCAGGAGCATATTATTTCAG
Seq C2 exon
GAGTCAGTGACATTTGAGGATGTAGCTGTGAACTTCACTAACAGGGAGTGGCAGTGTCTGACCTACGCTCAAAGGCATCTCTATAAGGATGTGATGTTGGAAAATTATGGGAACATGGTATCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935:ENST00000377179:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGCTCCATATCCTGCCT
R:
CAAGTGATACCATGTTCCCATAATT
Band lengths:
214-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains