HsaALTA1054428-3/6 @ hg38
Alternative 3'ss
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr6:28999487-29000047:-
Coord C1 exon
chr6:28999956-29000047
Coord A exon
chr6:28999570-28999613
Coord C2 exon
chr6:28999487-28999569
Length
44 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
GCAGGAGCATATTATTTCAGGAG
3' ss Score
-0.74
Exon sequences
Seq C1 exon
CTCTATTACCTGCTCCATATCCTGCCTTCACTAAAGATGGAAGCCAAGGAAACCTGCCGCAAGCAGATATCACACTAATGAGCCAGGCCCAA
Seq A exon
GAGTCAGTGACATTTGAGGATGTAGCTGTGAACTTCACTAACAG
Seq C2 exon
GGAGTGGCAGTGTCTGACCTACGCTCAAAGGCATCTCTATAAGGATGTGATGTTGGAAAATTATGGGAACATGGTATCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935-8-9,8-8,8-7,8-6,8-5,8-4-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGCTCCATATCCTGCCT
R:
TCCTTATAGAGATGCCTTTGAGCG
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains