HsaINT1047381 @ hg38
Intron Retention
Gene
ENSG00000205903 | ZNF316
Description
zinc finger protein 316 [Source:HGNC Symbol;Acc:HGNC:13843]
Coordinates
chr7:6637350-6638009:+
Coord C1 exon
chr7:6637350-6637447
Coord A exon
chr7:6637448-6637845
Coord C2 exon
chr7:6637846-6638009
Length
398 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GAGGGGCTGTCATCGTCTAGGTC
3' ss Score
5.72
Exon sequences
Seq C1 exon
CTCCCGGGCCGTCACTTTGTGTAGCGCGGGGTCCGCCGCCGGCCCGCAGGCCCCGGCCCCGGTGTCCGGCCCGTGGCTCGGCCAGCCCGGCCCGCGCG
Seq A exon
GTGAGTGGGTCTCGCGGGGCCGGTGGGCGGCGGCGCGGGCGGCAGGTGCGGGCGGGCCGGGCTTGCGCTCGGGGGCGGCGGCGGCGGCGGGGCCGGGCTGGCCCTCGACGCCCGGCGCGGGGAGGCCGCGGGGAGGCGGCGGGGCCGGGGCCTGCAGAGTCGGAGCGGAACGCGGGTAGGGACTTCCGCGGCAGCGCCCCCGCCTCCCGGACCCCCGTCCGGGCCTGCGCGTTGCCGACCCCCGGGGCCGGTCCGGGCAGGAGGCGGAGGGGGCAGGCCCGGGAGGCCACGCGTGACACCTCGGGGTGCCCGCCCACGCCTTCTCGGCCGCAGCGGCAGGGGCTGGGCCGCGGCCGCCCCCAGGACACACCCATCCAGGAGGGGCTGTCATCGTCTAG
Seq C2 exon
GTCTCTGCAGGAGGAGGCGGCTCCGGACGCCCCCTGGGGGGCGGGAGGCGCTCGGCCCGTCGCCCCAGGAGCCCGCTTTGTGACCTTGGGGGCCTTATCCGGGCTTTCCCTCATCTGCAGAAGGAGCCCCGGTGGGCTGCTCGGCTGTCTTCTGCTGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205903:ENST00000614588:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCCGTCACTTTGTGTAG
R:
CGGCAGCAGAAGACAGCC
Band lengths:
254-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains