Special

HsaINT1047455 @ hg38

Intron Retention

Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:HGNC:20647]
Coordinates
chr19:57923192-57928047:-
Coord C1 exon
chr19:57925623-57928047
Coord A exon
chr19:57923290-57925622
Coord C2 exon
chr19:57923192-57923289
Length
2333 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTTTTTGTTTTTGAGACAGAAT
3' ss Score
2.66
Exon sequences
Seq C1 exon
GTTGTTGGTGTGGATCAGAAGATGAGGAGGCACCTTCTAAGAAGAGCATTTCTATACAAAGAGTGTCTCAGGTCAGCACTCCTGGGGCAGGTGTGTCTCCCAAGAAGGCCCACTCTTGTGAAATGTGTGGCGCGATCTTGGGAGACATTTTGCACTTGGCAGATCATCAGGGGACACATCACAAGCAGAAACTGCACAGGTGTGAGGCATGGGGGAATAAATTGTATGATAGTTCAAACCGTCCGCACCAGAATCAGTACCTTGGAGAGAAACCCTATAGAAGCAGTGTTGAGGAAGCATTGTTTGTGAAGAGGTGTAAGTTCCATGTGTCAGAGGAGTCATCTATCTTCATTCAGAGTGGAAAGGACTTTTTGCCCAGCTCAGGATTACTGCTGCAGGAGGCCACTCACACTGGGGAGAAGTCAAACAGCAAACCTGAGTGTGAGTCTCCCTTTCAGTGGGGAGATACTCATTACAGCTGTGGAGAATGCATGAAACATTCTAGCACCAAACACGTATTTGTTCAACAGCAGAGACTTCCCTCTAGAGAGGAATGTTATTGCTGGGAATGTGGGAAATCCTTTAGCAAATATGATAGCGTCAGTAATCATCAGAGAGTTCACACTGGGAAAAGACCTTATGAATGTGGAGAATGTGGGAAATCTTTTAGTCATAAGGGCAGCCTTGTTCAGCATCAGCGAGTTCACACTGGGAAAAGACCTTATGAATGTGGAGAATGTGGGAAATCTTTTAGTCATAAGGGCAGCCTTGTTCAGCATCAGCGAGTTCATACTGGAGAAAGACCTTATGAGTGTGGAGAATGTGGGAAATCTTTTAGTCAAAATGGTACTCTCATTAAACATCAACGAGTTCACACTGGAGAAAGACCTTATGAGTGTGAAGAATGTGGGAAATGTTTTACTCAGAAGGGCAATCTCATTCAACATCAACGAGGTCACACTAGTGAAAGACCTTATGAGTGTGAAGAATGTGGAAAATGTTTTAGTCAAAAGGGCACCCTAACTGAACATCATCGAGTTCACACTAGAGAACGACCTTATGAGTGTGGAGAATGTGGGAAATCTTTTAGTCGAAAGGGACACCTTAGGAACCATCAGCGAGGTCACACTGGAGAAAGACCTTACGAGTGTGGAGAATGTGGGAAATCTTTTAGTCGAAAGGGCAACCTCATTCAGCATCAGCGAAGCCACACTGGAGAAAGGCCTTATGAGTGTAGAGAGTGTAGGAAATTATTTAGGGGCAAGTCCCACCTCATTGAACACCAGAGAGTTCACACTGGAGAAAGGCCATATGAATGTAATGAATGTGGGAAATCATTTCAAGACAGCTCTGGGTTTCGTGTTCATCAGAGAGTTCACACTGGAGAAAAACCGTTTGAGTGTAGTGAATGTGGGAAGTCATTTCCTCAAAGCTGTTCCCTCCTTCGACATCGGAGAGTTCATACTGGAGAAAGGCCTTATGAATGTGGAGAATGTGGAAAGTCATTTCATCAGAGCTCTTCCCTCCTTCGACATCAGAAAACTCACACTGCAGAAAGACCTTATGAGTGCAGAGAATGTGGGAAATTCTTCTCCAGTCTCCTTGAACACAGGAGAGTTCACACTGGAGAAAGGCCTTATGAATGCAGGGAATGTGGAAAAACATTTACTCGAAGGTCTGCGCATTTTAAACATCAGAGACTTCATACTCGAGGAAAGCCTTACGAGTGCAGCGAATGTGGGAAATCCTTTGCTGAAACCTTCAGTCTTACTGAACACAGGAGAGTACACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGAAAATCATTTCATCGAAGCTCTTCTCTCCTTCGACATCAGAGAGTTCACACAGAAAGAAGTCCTTACAAGTGAAAAGAAATTTGGGAAATTCTTTAGCTAAACCTCTGTGCATCTTCTTGATCAGAGGGTTCTTACTGGATCAGGACCTTATGAGTGTGACAAACGTGGGATATTCTTTATGCAGAAGTCTTGTTTTATTACATACAGAAGAGCTCCCACTGCAGAAGGGCCTCTTGAGTGCGATGAATGTGAGAAAGCCTTCTGCCTTCTGTCATTGGATAACAGATTGTTCTCATAAGGAAAACACTGTACACGTACAGGAAATATTATTTCTTGTAAAACATAACACTGGAGGAGATGCCTTATGACGGAGCCATCTGCCTAAATTGACATACCTTCAGCATCTGCATAAACTCAATTATGTTGGAGCTGTGTGGCATTTTTCACCCTGCCGGGTTCCCTTGCCAGACATGATGTCGGTTATCTGGCAAAAGCCATTTTATGTCGGCCACGAGGCAGGTGTTCACTGTGCATCATTCATTCACCCCATGATGTTCTGGAAGTAAACCTTGGTTGTCTTTCGTTGGCCAGAGGAATTG
Seq A exon
GTGAGTAGTCTCAGCTGTCATTCCTTTCTCATTTCTTTCGGATGAGCGAGACCATGGATCTGTCTCAGTACTGGTCCAGAGGGGTCTTCTGTCAGCTTGAAAAGATGGACTACCTTTTTCAGGGACCTTATGGGTCTCATGTGATATTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTACAGTGGCGTGATCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCATGCCCAGCTAATTTTTTTGTATTTTTAGTAGAAATGGGGTTTCTCCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCTGCCCTCCTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCGGGTCTCATGTGATTCTTTAGGCTCTTAAGTTCCAACCAAAGAACATTCTGCTTCCCATTGCTCTGATTTGTGCAATGAATAAGGCCTTATTGTTTAAGCTTCCTTCAGTCTTGAGAGTTGTATTTACTCTTTCGGGTGGTTTGGAAACAACTGGGTTCTGGTGTCATAAAGGGGCAGACAGCTTTTGTTGGGATCACTAGACTTTGTGTGCCTCAGAGGGGACAGTATGATGACAGAATATACTGTCTCTTCACTTGTGGCATAGTTTTCATGGCTGCCCAAGGCCTCCAAAGACTCCAGAACTTTGTGGTCCTTATTTGTTGACTAGATACTCCAATAATTTCTGGGTTTATAGATAAACCTGAGAAGGGAACAGTGTTTGTGACATCCTCTGATGCTTCTGAGATCGACACGAAAATTTCCTCTCTTTTACAAGGGATATTGCATTCTGCTCAGTACTGCTGAGGGAAATCTGTTCCCTAGGTCCTGGAATGCAGCCATGTGCTCTGATATCCAGAGTTTCGTAGTGTGGTGTCCCAGGTTATGAGATTATAACAGGAAGTCATAATTTATAGAATTTCTGCATTTATAGGCAGTGGAGGACACTGCAAGAACAGAGTTGGAATGCACGTCATCCACATTGATTCAGTTACTATGTATGTGGTGGACTGTCAGGTACAGAAATTCTCAGAACCTCCATAATTATGAATCTTGTGTAGCTGAGGCCATTGTCAAAGGAAATAATATAAAGGATTCGTGGATTCCTGTACCCTTTCTCGGCTGTTCACCTCAAGGCAATTCCTGCATTGGCAGGAGGAAGAGGATAGGGAGAAGGGAGATCTCTTAGTCCAGTGATGTGGTCTTTGTGACCAACCAGTGTTCCAATTTAATCAGGTGAAAATGGCCTTCCTGGCTTATCAGTATTTGCTGCCGCAGAGACTCATTGCTGCACTTAGGACATGAGGAGATTTTGTATAGTTGTCAAGCATGTTTGTCAAAAATAATAGAAAATCCATGTTTTTCTTTTTTTTTTTTTCTAAGACAAGGTGTTGCTCTGTGACCCAGGCTGGAGTACAGTGGCGAGATCATAGTTCACTGCAGCCTCGAACTCCTCAAGCAATCCTTTTCCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCCTCAGCCATCATGTCCAGCCCACATTTTTCTTTTGAATCAATTCTTTAAAGCCATAATAAGGAATAAATGACATTCTGTAAACTATACATATTTAAACTGTACCATGTGGTAAGTTTAGACTTTCATAGAAACCCATGAAAGTGGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGAGTGAACCCGGGAGGTGGAGCTTGCCGTGAGCCAAGATCGCACCACTGTACTCCAGCCTGGGTGACAGAGCAAGACTCGGTCTCAAAAAATATATATATATGTGTATATATGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATATATGTATATATGTATATATGTGTGTGTATATATGTATATACATGTATGTATATGTATGTATATATGTATATATATGTGTGTATATATGTATGTGTGTGTATATGTATATATATATATATTTTGCATCCCTTGGCATAAATGGGTTAGGTAAGTGTGTCACTAAATAGAAAAATACTCCCGTCTGCAATGAATTAGAAAGTTGCTTTTGATTCTTTCTTAATTTTTTTTGTTTTTGAGACAG
Seq C2 exon
AATGTCCGTCTGTCTGCCCAGGCTGGAGTGGCACGATCTCAGCTCACTGCAGCCTCCACCTCCAGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724:ENST00000396147:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact





	

	
3' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.122 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSP00000470127





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSP00000379451, ENSP00000407039, ENSP00000468855, ENSP00000468968, ENSP00000469034, ENSP00000471652, ENSP00000472062, ENSP00000483763
  



Associated events







Conservation


Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
chr1:63285613-63286373 
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Autistic and control brains





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"