HsaEX0073619 @ hg38
Exon Skipping
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:HGNC:20647]
Coordinates
chr19:57921884-57928047:-
Coord C1 exon
chr19:57925623-57928047
Coord A exon
chr19:57923192-57923289
Coord C2 exon
chr19:57921884-57922629
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTTTTGAGACAGAAT
3' ss Score
2.66
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
AACCTCTGTGCATCTTCTTGATCAGAGGGTTCTTACTGGATCAGGACCTTATGAGTGTGACAAACGTGGGATATTCTTTATGCAGAAGTCTTGTTTTATTACATACAGAAGAGCTCCCACTGCAGAAGGGCCTCTTGAGTGCGATGAATGTGAGAAAGCCTTCTGCCTTCTGTCATTGGATAACAGATTGTTCTCATAAGGAAAACACTGTACACGTACAGGAAATATTATTTCTTGTAAAACATAACACTGGAGGAGATGCCTTATGACGGAGCCATCTGCCTAAATTGACATACCTTCAGCATCTGCATAAACTCAATTATGTTGGAGCTGTGTGGCATTTTTCACCCTGCCGGGTTCCCTTGCCAGACATGATGTCGGTTATCTGGCAAAAGCCATTTTATGTCGGCCACGAGGCAGGTGTTCACTGTGCATCATTCATTCACCCCATGATGTTCTGGAAGTAAACCTTGGTTGTCTTTCGTTGGCCAGAGGAATTG
Seq A exon
AATGTCCGTCTGTCTGCCCAGGCTGGAGTGGCACGATCTCAGCTCACTGCAGCCTCCACCTCCAGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGG
Seq C2 exon
GGATCTCAAGGGCATTTCCCTTTGCCCACCTCACCTTTTCATATTTGGTAAACTGTATGCATTTGCCTCCAGCCCAAGATTATAAATATGAACTGATTATGATCTGCATGTTCTCTCTTTGGGTTCAAGCATTTCCTTACAGAAGAGCCACCGTGGAAGTCATGGGTAAATATGTGTTGAATTGGTAACTCCCTCTTGGAGAATTTCTTGTGAATTACACAGCAATAGGGGAACTCATTTAACTGGAGACATAATCTCAATTTGTAAAGTGTGGCCCATTTTCTAACATTTTTATTTTGCATACCCTCCCCTCTCTTCTCGATTGATGAAACTAACAAAGAGGTTAATAAAAGCCCATCTCGTCATGTACAGGGACTCATGCCTTTAATTCCAGTGTTTTGGGAGACTAAGGCAAGAACATCCTGGAGGCCAGGAGTTCGACACTGTATAACAGATATATCTGACAGCAGTAACTCAAGCACACCCTAAGAATGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724-'21-16,'21-14,23-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTCTTTCGTTGGCCAGA
R:
ACGGTGGCTCTTCTGTAAGGA
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development