HsaINT1047456 @ hg38
Intron Retention
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:HGNC:20647]
Coordinates
chr19:57921884-57923289:-
Coord C1 exon
chr19:57923192-57923289
Coord A exon
chr19:57922630-57923191
Coord C2 exon
chr19:57921884-57922629
Length
562 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TGAATTTTCTTTCTTTTCAGGGA
3' ss Score
11.48
Exon sequences
Seq C1 exon
AATGTCCGTCTGTCTGCCCAGGCTGGAGTGGCACGATCTCAGCTCACTGCAGCCTCCACCTCCAGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGG
Seq A exon
GTAGGTGGGATTACAGGCATGCACCACCATGCCCGGTTAATTTTTGTATTTTTAGTGGAGATGGGGTTTTACCATGTTGTTCAGGCTGGTCTTGAAGTCCTGACCTTGTGATGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTTCAGGCATGAGCCATAGTGCCTGGCCCTTTTTTTTTTTTTTTTTTTGAGACAGTGTCACTCTGTTGCCCAGGCTGGAGTACAGTGACACAATCACAATTCACTGCAGCCTTGACCTGCTGGACTCAAGTCATCCTCCCACCTCAGCCTCCCAAGTTGCTAGGGACAGGCATGTGCCACCACGCACAGCTAATTTTTAAAATTTTTCTGTAGAGATTAGGTCTCACTATGTTGCCCAGGCTGCTCTCAAAACTCCTGAGCTCAAGGGATCTTCCCACCTTGGCCTCTCAAAATGCTAAGATTACAGGATGAGCCACTGTGCCTGGCATGCTTTTGGTTTTTTTCTTGCAATTTAACAAAGTGGTGTCCCATATATTTAAGTATCAAATGTATAACTGAATTTTCTTTCTTTTCAG
Seq C2 exon
GGATCTCAAGGGCATTTCCCTTTGCCCACCTCACCTTTTCATATTTGGTAAACTGTATGCATTTGCCTCCAGCCCAAGATTATAAATATGAACTGATTATGATCTGCATGTTCTCTCTTTGGGTTCAAGCATTTCCTTACAGAAGAGCCACCGTGGAAGTCATGGGTAAATATGTGTTGAATTGGTAACTCCCTCTTGGAGAATTTCTTGTGAATTACACAGCAATAGGGGAACTCATTTAACTGGAGACATAATCTCAATTTGTAAAGTGTGGCCCATTTTCTAACATTTTTATTTTGCATACCCTCCCCTCTCTTCTCGATTGATGAAACTAACAAAGAGGTTAATAAAAGCCCATCTCGTCATGTACAGGGACTCATGCCTTTAATTCCAGTGTTTTGGGAGACTAAGGCAAGAACATCCTGGAGGCCAGGAGTTCGACACTGTATAACAGATATATCTGACAGCAGTAACTCAAGCACACCCTAAGAATGACCCTGTGGTCTAAGAAGAGTGTTGGTTCAGCGTTCCAAACGAAGAAATCCAGGAGTGGCCAACCTGGAGGTTTCTGAACCCCTGGCCTGTTCCTTGGAATGAGGCCCTTTGTTTTGAGCTAGGCGGAGGGTGATAAGTGAAAATACTATATAAACTGCATGCTTCTTTCAAATGATAGTGGTTTTTTTGTCCAGCCTGCCGCTCCTGGACTGCCCTGTATCTAAGTCCTCAATAAACCCTATGTCTCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724:ENST00000396147:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGATTCTCCTGCCTCAG
R:
TCGAGAAGAGAGGGGAGGGTA
Band lengths:
351-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains