HsaINT1047460 @ hg38
Intron Retention
Gene
ENSG00000118620 | ZNF430
Description
zinc finger protein 430 [Source:HGNC Symbol;Acc:HGNC:20808]
Coordinates
chr19:21033456-21034184:+
Coord C1 exon
chr19:21033456-21033582
Coord A exon
chr19:21033583-21034085
Coord C2 exon
chr19:21034086-21034184
Length
503 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
GTTATTTATTTTCAATAAAGCAG
3' ss Score
0.79
Exon sequences
Seq C1 exon
GGGCCATTGACATTTAGGGATGTGGCCATAGAATTTTCTCTGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAGGATTTGTATAGAAAAGTGATGTTAGAGAACTACAGAAACCTGGTCTTCTTGG
Seq A exon
GTGAGAATAACTTTAGTACACAATTACTAGTATACCCTAAAGGTTTCATTTCTCATTTTTTGAGAATAATTTTTGGTAATTTATGCTTTGCATAAATGAGTTTCTGATACTTGTTCTTAAGAAAACCTTGAGGATTTTTCCATATAGGAAAGAATTTTTTCAAGAAGTTTTATCTTGACTTAAACTTTCCACATTCCTGGGCTGATCTGTATCCTTCACTCTAGATTAGTGGCAATTCCAGAAATTTAGTGGCATAAAATATTGTTGCCCATATCTTAAAATCTATTTGCCGCCACCAATTTTTGATTAATGAATGCCAGGCAGTGAAATTAAGAACCTACAAATGTAAAATATTTTCTAAATACTTAGAAATTTCTGTTATAAATTAGTATTTTTAGGATTAATTTTCTAGAATATTCTACCACATCCTCTTTACTAAGCACAGTACTAGGTTGGTAACTGAAGAATATGAGAAAGATTCATGTTATTTATTTTCAATAAAG
Seq C2 exon
CAGGTATTGCTGTTTCTAAGCCAGACCTGATCACCTGTCTAGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGCGATGGTAGATCAACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118620:ENST00000261560:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATTGACATTTAGGGATGT
R:
GGGGGTTGATCTACCATCGCA
Band lengths:
224-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains