MmuINT1035716 @ mm10
Intron Retention
Gene
ENSMUSG00000069184 | Zfp72
Description
zinc finger protein 72 [Source:MGI Symbol;Acc:MGI:3033356]
Coordinates
chr13:74374968-74376566:-
Coord C1 exon
chr13:74376436-74376566
Coord A exon
chr13:74375064-74376435
Coord C2 exon
chr13:74374968-74375063
Length
1372 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CTCCATTTTTCTACAAACAGGTC
3' ss Score
8.76
Exon sequences
Seq C1 exon
CCAGGGGTGGTTGTCATTCAGAGATGTGGCCATTGATTTCTCTGCAGAGGAATGTGAATGCCTGGACGCTGCTCAGTGGGATTTGTATAGCGATGTGATGTTGGAGAATTACAGCAACCTTGTCTCTCTGG
Seq A exon
GTGAGCATCACTTCCCTATTGAATCCTTAATTCGTTGTTAACATTTATAGAAAATGTCATGGGAGCTTATGTTTTATATCAATGAATTTTATGTTTCTGCTTTTAAGGAAAAAATAAAGGGATGGTTAGTAATCATTTAGATAAATTTTATTATGTTTCTTCTACTTTTAACCCCTTTTGTTTTAAATTATGAATTCTTTATTCTAGAAGCAATTTTAGAAATTAGTTGAACGAAACATACCTCACACATCTTAAAGTAAAACGATGCACCCTTAAATTTAAAATTTTCTGTATTTGTAGGTAAAGCTCAAGATTTACAGATTATAAAATCTTCCTATGTATTATAATATGTTTATCAGAGTAGGGTTAAATGGGGTCCTGTGTCTGCTCCGCCACTGGGCTTGGGCCACTGAGGGAGACAGGATGAGGGAGTTTTGATTGCGCTTAGCCCACACCGGGTGAGGCTATGGGGAAGCCGCAGGACACCGCTCCAGGGGTGAGGTCCCAGGAACAGCTGAAGTTGGCTCGGGGGTCCCTGAGCCTGCAGGGAGGCCAGGGCCATCTGTTCCTCAGGCTCTTGGGTACCCAGGTACCGCTGGGAGCTGTGGAAGAGCTGAGAATGGAGTGGGGACCCATGGGCTGGATCTGGCCCGGAGCCATGGGCAAAAAGAGGGGAACTCCAACTGGATCCCGCAGGGAGGAGTCCTTGGCTTGTTGATGGCTGGTTGGCTTGGCTTGGTGGTTGTGACTGGGAGCACAGAGAGCCTTGTACTGGAGATTAGACACTGTTCAATAGGCAAAGGTCTTCTATATGGTAACCCATGGCAGATCCTGATGAAAAGAGACAGTCCATGGTTTTAAGGCATTTATTGTCATGGCAGAAAATGGATGAGTAAAACCATACCCACACAAGGTGGTGGCACATGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCAAGGGCTACACAGAAAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAACCATACCCTACTTCTCAGGGAGGGGTTAAATACCTTTTGTAGGGAGGCGTGTCTGTGAAGGGGAGTTTATTGGCTAATTGTCAGGAGCCTAGTATCCAGGAACCAGGCAAAATGCCTGCTAGCTCAACCGGGAACCAGGCTGTCTTTCACGGTCCTACATATCAAGAAACATTTAGAGAAATGTTTTTTTTTCCTGCAAGCTTTCATTAGTCTTCTTTCCATATTATAAGCACAATACTTGGATAGAAATGCTGATTTCCCAGAGAACAACATAAAGCATCACGCTCCATTTTTCTACAAACAG
Seq C2 exon
GTCTTGCTTTCTCTAAGCCCTATCTGGTCACATTTCTGGAAAAAAGACAACAGTCTTGGGATGTGAAACAACAAGCAACAGTGGCTACATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069184:ENSMUST00000091481:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGGTGGTTGTCATTCAG
R:
GGGTATGTAGCCACTGTTGCT
Band lengths:
225-1597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types