HsaINT1047526 @ hg38
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr19:47532909-47538439:-
Coord C1 exon
chr19:47538142-47538439
Coord A exon
chr19:47532973-47538141
Coord C2 exon
chr19:47532909-47532972
Length
5169 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TTTCACTCTGTGCTTTCTAGATC
3' ss Score
10.11
Exon sequences
Seq C1 exon
GGACAAGAGAAAGACGGGGAGGAGCGAGACAGCAAGGAGAGCAGCCAGCAGAGAAAGCGGAAGAAGCGGCCCCCACCCTCCACGGCTGGGGAGCCTGGCCCTGCAGGATGCCACCAGAGCCGCCTGCGGTCACCCATGTTCCTGGTGGACTGCCTCCTGAAGGGCTTATTCCAGTGCTCCCCCTACACACCACCCCCAATGCTCAGCCCCATCCGGGAGGGCTCTGGGGTGTACTTCAACACCCTCTGTTCCACGTCCACTCAGGCCAGCCCTGACCAGCTCATCAGCTCCATGCTCG
Seq A exon
GTGAGTGAGGCTGGGGCACTCACTCTGTGATCCCAGGGTGGATTGCCTGCGGACCACAGCCACTCTACCTTGTAGCATTGGGTTCAGTGATTGTCTCCTGCCTGGGTGTACCTAGTCTGAGGGTTCCTTTGCTATTCAGATGTGCCCCAGGACTGATCTAAGTGCCTTCTAGTGCATAGAATTTTACAGCCCGAAAGAAAACGTAGAGGCCATTTAGCCTGACCATGCTTCTGCCTGCCCTTCTGTGTCATTTTCTTTTTCTTTTTTGAGGCAGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTGATCACAGCTCACTGCAGCCTCGATCTCCTGGTCTCAAGAGATCCTCCAGCCTCAGACTCCCAAATAGTTGGGACTACAGGTGCGCATCACCACACCTGGCTAATTTTTTATTTTTCTTAGAGATGGGGTCTTGCTATGTTGTCCAGGCTGGTCTCGAGCTCCTGGACTTGTGATTTTGCTGCCTTGACCTCCCAAAGTACTGGCATTAAATGTGTGAGCCACCCTGTCCAGTCTGTGTCATTTCCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTATCACTCTATCACCCAGGCCAGAGTGCAGTGGCGTGATCTTGGCTGACTGAAACCTCCAACTCCCAAGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGTGCGCCATCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTGGTCTCGAGCTCCTGACTTCCAGTGATCCACCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCTGGCCTGGCCTATGTAATTTTCCTAACAGATTTATTGAGCTGTACTTCACATACCATGCAAATCACCCATTTAGAGTATGCAGTGATTTTTAGGATATTCACAAGGCCGTGCAACTATCACATAGTCTTAATTTTAGAGCACGCTTAGCATCCCCAGAAGAAGCCAGAGCTCATTAGCAGTGACTCCGCCCATATCCCCACAGTCCCTTCTTCCCCCAGCCTGGGCACCCACTCATCTGCCTTCTCTCTTTGGATTTGCCTATTCAGGACATTTCATGTAAGTAGAATCATACAATATGCAGCCTTTTGTGTCTAGTTTATTTCACTTGGCATGTTTTCAGAGTCCCTTCATATTGTAGTGCATATCAGTGCTCAATTCCTTTTTATGGCCGAACATTTTTCCCTTGTACAGATGGGCCCCATTTTGTTTATTTATCAGTTGATGGACATTTGGGTTGTTTCCACTTTGGGCTATTATGAATAATGCTGCCATAAACATTCATATAGAAATTTTTGGGGTTTTTTTGGGAGACAAGGTCTCACTCTTGTCACCCAGGCTGGAGTGCAGTTGTATGATCACAGCTCACTGCAGCTTCAACCTCCTGGGCTCAACTGATCCTTCTGCTTCGGCCCAGAGTAGCTGGGCCTACAGGCATGCACCCCCATGCCTGGCTAATTTTTTGTAATTGTTTTTATGTAGGGAGGGGGGTCTTGCCATGTTGCCCAGACTGGTCTCAAACTCTGAGGTGGGCCAGGCATGGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCTGGGGCGGGTGGATCACCTAAGGTCAGGAGTTCAAGACCAGGCTGGCCAACATGGCAAAACCTCGTCTCTACTAAAAATATAAAAATTAGACGAGCATGGTGGCGGGTGCCTATAATCCTGGCCACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACTGAGGGTGCAGTGTTGGGAACAGGCCCCCCAAAATCTGGCCATAAACTGGCCCCAAAACTGGCCATAAACAAAATCTCTGCAGCACTGTGACATGTTCATAATGGCCATGACACCCACGCTGGAAGGTTGTGGATTTACCGGAATGAGGGCAAGGAACACCTGGCCGACCCAGGGCAGAAAACTGCTTAAAGGCGTTCTTAAACCACAAACAATAGCATGAGCGATCTGTGCCTTAAGGACATGCACCTGCTGCAGATAACTAGCCAGACATATCCCTATATTTTGGCCCATCCCTTTGTTTCCTGTAAGGAATACTTTTAATTGATCTATAATCTATAGAAACAATGCTTATCACTGGCTTGCTGTCAATAAATATGTGGGTAAATCTCTGTTCAGGGCTCTTAGCTCTGAAAGCTGTGAGACCCCTGATTTCCCACTCCACTCCTCTATATTTCTGTGTGTGTCTTTAATTCCTCTAGCGCCGCTGGGTTAGGGTCTCCCCGACCGAGCTGGTCTCGGCAGCGGAGGTTGCAGTAAGCCGAGACCATGCCATTTCACTTTAGCCTGGGCGAAAGAGCTAAATTTGGTCTCAAAAAAAAAAAAACAACTCTGGGGTGAAACAGTCCTCCTGCATTGGCCTTCCAAAGTGCTGGGATTAGAGGCCTGAGCCACCACACCCAGCCTTATGTACAGGTTTTTGTGTGGATTTATGTTCTCAGCTCTCTTGGGTAGATAACTAGGAGTGTAGTGCTGGGTCATATGGTAACTCCATATTTAACTGTTTACAAACTGCCGGATTGTTTTCCAAAATGGCTGGGCCACTTTAAATTTCCAGTAGCAGTATATGAACATTTTCATTTCTCCTCCTTCTTGTCAACACTTGTTATTGTCTATCTTTTTAAGTATAACCATCCTAGTAGGTGTAAAGTGGTCCTTTTGCAGGACAAACATTTCTAATTTTCATGAAGCCCAATTTCCTTTCTTTTGTTACTTGTTCTTGTGGTGTTATATGTGAAGATTTGCCTGACCCAAGTCATGCAGAGTCACTCTTGTTTCCCTGTAAGAGTTTTGTAATTTTGGTCCAGGTGCGGTGGCTCACGCCTGTAATGCCAGCACTTTGGGAAGCCGAGGCAGGCGGATCACGAGGTCAGGAGCTCAAGACCAGCCTGGCCAACATGGTGAAATCCCGTCTCTACTAAAAATACAAAAGAATTAGCCGGGTGTGGTGGCAGGCACTGTAATCCCAGCTACTCAGGAGGCTGAGACAGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAGGATGGCACCACTGCACTCCAGCCTGGGCAACAGAAAAAAAAAAAAAAGAGCTTTGTAATTTTGACTCTTAGGTTAGGTCTGTAATCAATTTGAAGATAACTTTTATATATTACATGAGGTAAAGGTCCAAATTCATTTTTTTGCATGTGTATATGCAGTTCTTCCAGCAGCATTTTTTGAAGACTTCCCATTGAATTGACTCAGCACAATTCATTGTTAGAAATCAATTGACCATAAACGTGTGGGTGTATTTCTGGGTGTTCAATTCTATTGATCTGTATACTTATCCTTATGCCAGTATCACACTGTTTTGATTACTGTAGCTTTTAACTTTTGTTTTTTTGTTTTGGGGGGGTGGTTTGGAGGGGTTTTTTTTTGAGACAGAGTCTTGCTGTGTCACCCCAGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAGCCTCTAACTCCCAAGTTAGCCTCCCACTTCAGCCTCCCGAGTAGCTGGGATTACAGGGGTACACCACCACACCAGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGTTATGTTAGCCAGGCTGGTCTTGAACTCCTGACTTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCATCAGGCCTTTTTCTTTAGATATTTCTTTCTGTCTCTTTCTCCTTTCCATCTGGTACTCCTGTTACATGTAGCTGCTGTACTTAATGGTATCCCACATTTCTCTGAGGCTCTCTTTATTTTTCTCTTTGTTCTTCGGATTCCATAGTCTCTACTGATCTGTCTTCAAGTTTACAGATTATTTTCTTCCTGTCAACTCAAACCTATTGAGCCCCATTTTGGTTATTTTATTATTTTCCTCAACAGCTTCACTTGCCAATATTTTACTTTCTAACCCCAGAATTCCCATTTGGTTCTCTCTTTTTAATAATTTCTACCTCTTAATGATATTCTGTCTATGATGAGAAATTGTCATTATACCTTCCTTTAATTCTTTAAGCATGGGAGCTGACAGGAGAGGCAGCCCCTGTCTGGGCTGCACCTACCTGGAATAGAACCCTTGGAGCTGGGAGCTGGCTGGGTAAGGGAGCAGGTCACAGCTCAGATGCAACAGCCTCTTGTTCTTACCAATATTCAGTTGATTATTTTTTATTTTTTATTTTTTTGAGATGGAATCTCACTCTGTTGCCCAGGCTGGAGCACAGTGGCACAGTCTCGGCTCACTCTGCCTCCCAGGTTCAAGTGATTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACATTCCACCACGCCCAGCCAATTTTTGTATTTTCAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCGCCCACCTCAGTGTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCCCACCCGGCCTAGTTGATTTTTTTTAATGAATATTTCTCCAAGTGCTGAATGACCTTAGGACAATTTCCAGAGACTTTAGTGTGCTGTTTTTATATATACGTATACTTGTCATGAGTTAATTTGTTAGAGTTCCTTCCTCTACCTTTTCTGAAGTGCTGCCCTTTCCCATGGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACCGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTTCTGTCTCAGCTGGGACTACAGGCACCCACTACCACGCCCGGCTACTTTTTTTTGTATTTTAAGTAGGAACAGGGTTTCACTGTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGTGCCCGGCCAACCCATGGGATCTTAAAGACCCTGCTTTCAGCTGCGTCCACACAGGCAGGCAGAGGACCCTGTCGGTTACCTGCTGTCTGTCTTCTTGAGCCTTTTCACTCTGTGCTTTCTAG
Seq C2 exon
ATCAAGTGGATGGGTCCTTTGGCATCTGTGTGGTGAAGGATGACACCAAAATCAGCATTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156:ENST00000391901:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENST00000263351fB30808
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains