MmuINT0179443 @ mm9
Intron Retention
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16668570-16675209:+
Coord C1 exon
chr7:16668570-16668921
Coord A exon
chr7:16668922-16675145
Coord C2 exon
chr7:16675146-16675209
Length
6224 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTCCCTGTGTGTTTTCTAGACC
3' ss Score
12.18
Exon sequences
Seq C1 exon
GTGACACCTGTGGTTCTGTCCTCTCTTCTTCAGGGACAAGAAAAAGATGGGGAAGAGAGAGACAGCAAGGAGAGCTGCCAGTACAGAAAGCGGAAGAAGCGGCCCCAGCCCAAGGCCCTGTTTGCCCCTCCTGCACCCTCTGCCCTCGGGGAACCAGGCCCAGGAGGGTGCCACCAGAGCTGCCTGCACTCTCCTGTGTTCCTGGTGGATCACCTCCTGAAGGGCTTGTTTCAGTGCTCTCCCTACACACCACCGCCTATGCTTAGCCCGATTCGTGAGGGCTCTGGGCTGTACTTCAATACCCTCTGCTCCACATCCAGGGCTGGGCCCCACCTTATCAGCCCTGTACTTG
Seq A exon
GTGAGTGAGGCCAGAAAGCTATTCTGTTCCAGGATCAGGTGCTTCTCCTATGGCCCACAATCTCTCTGCCTTACAGTATATGATCCAGCCATTCTTTCCAGCCTTGTATGTGTCTGTTCTGGGGGACTCATTGCTACTCAGAAACATACCAAGATGATTCTTCTAGATGTTTGTTTGGTTGGTTGGATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAACAGCCAGAAAGAACACATAGAGGCCACTCAGCCCAATTCCTCCTCTGTTCATTTTTATAGCCAGTCTATGGAGACAGAGACACACACCATGCCTGCCTGCCATGCAGATCAGCCATTTCAAGCTTGTGCTTTGAGGCTGCTCTCTGGCCTCTGAGCTTCCCTGCATACTATCTTTAGAGGGGTTTTGCCATCCCAGAAGCTTGTATTCCAGGCAGCTACACCACCCTCCTGGCTTCCATTCATCTACTTCCTGTTCCTATAGCCTTGCCTATGCTGGGTATTGCATATAAGTGACATCATACAATGTGTGGCTTTTTATGTATCACCCATTTTACTTAGTTCGGTGTGTTCAGGGTTCAGCAGGTGGTAGTGTGTGTTAGAATTTCTTTTTTATTGGTAATAGTCTACTCAATGACCACTCTTTTAAATCATCAGTTGATAGGTATGGGTATTGTTTTCCTTGTAGCTTTCATAAATAATGTTGTAAGAACATTTGTGTATAACTTCCTATGGGGGACTATGTACCAATTCCTTTTGTATAAATACCTACAAAGAAAAGCTTGGTCACATGGAAATTCTATTTAAACATCTAAGAAACTGCCAAACTAGTGCCAGAATGTCCCATTTTGGATTTCTGCTAACAATCAGGAGAGTCCTGATACCTCTGCCCCTTGCCTGCACTTTTAGACTGTGATTCTTTCTAGCCGTCCTGTCAGATGAAAGAAAGGTACCTATTGTTATCTTTTGTTATGTTTGGATTTGTATTATCCTACTGGCTACTGGTACCAAGAATCTTGCTGGGTGTTCATTGGCTGTTTGTGTGTCCTTCCTTATAAACTAAGGAGATCTCTTTATTTTCCTAGTGTCATTTGTGCACTGGGCTTTATATGTGACCAGTTGACTGGCACAGAGTAATGAAGAGCCACTCCACTCCTGATTACTCTGTAGGCCAGGCAGGCCTTGAGTTCATACCCCTCCTGCCTCAGCCTCTTGAGACACTAGACGCACAGTATCTTTTTTTTTTTGAGAGAGAGAGAGAGTTTTATAATTTTGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGCTTGGCTTGGCTTGGTTTGGTTTGGTTTGGTTTGGTTTGGCTTGGCTTGGCTTGGTTTGCTTGGTTTTTTAAGACAGGATCTCTTTGTCTAGCATTGGCTGTTCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAAAGAAATTCACCTGCTTCTGCCTCCCAAGGAGAGGAACTAAAGGCATGTGCCACCACTGCCCAGCTATAATTTTGACTCTTAAATTTACATCTTTAATGGATTTCCAACTAGCTTTTGGATATTGTATGAGGTAAGGATCAAAGTTCATTATTTTGTATGGATTCCATTCATTTCAGGATCATTTGCTGAAAATATAATTCCCATCAAGTTGGTTTTAGCAAGTTGATTTTACTAAAATCAGGTTACCAAGGCACAAAGACCTGAGTTCAGTTCCCAGAGCCTATGAGAAAAAAAGCCTAGTGTAGTGGCATACAATTGTACTCTCAGCAATAGGGAGATTGGAGCTTTCCTGGCAGCCAGTGCAGCCTGTTGAGTGAGCTGTAGGCCAGAGAGAGATCTTGTCTCAGAAGACAAGGTGAGTGATGTCTGAGGAATAACATGTGACATATACCTGTGCCCCATACACACTTGCATACTTTTCTGAATAAATGTGCACTTGCAAATGCAAACACACACCTCCATTAATCATCAGTGCATGTGTTTGCTCCACAGACGAGTTCTTTTCTATGATCTGCATGCTTATGCTGGTACCATAGTGCTTTGACTACTGTAGATTTGTGTAAGCTTTCAAATAGGTGTATTTGAATTCTCTTATGTTGTTCTGTCTTCCAGAATTGTGTTAGCTGCCATAGGTCCATTGCATTACTGTAGAATTTTAGGATCAGTGGTTATTTTAATAGTTACTCTGTTTAATATGTACATAAGTTAGAAAGTATTACTATCCTAAATAATTTAGACCTTTCTATTCATGATGGACCAGACCATCTTCCCATTTATTTAGGACTTGTTGTACTTTGTCCCAATCATTTTTCCCAGTGTGTGTCTTACATATCTTTGCTTGTAGCTGTTTTTTTTAGATAGGATCTCTATACGGTCCAGGCTGGCCTGGAACTCCCCATTCTCCCACCTGTGTCTCCCAAGTGGTGGAAAGGCAGGCACATGCCATTTGTTGTGCAGTAGACATCTTTCCTTAGCAGAATCCGTTTAGATTTGTGTTCATGTAGTAATGGTGAAGGGCAGAGACACTGCATTCTCCATCTCATGGGCCTTTCCTGTGCCATCTGTTTCTAAGCAGATGTGTCAGCAGACTCCATTCTGAACTGTTGTCCTTACAACTTTATGTACAATTTTATAGATTTGGTCACATGAAGTCAAAGCAATAGAAGAAAGCAAGCACTGCCTGCTGAGTTTGCTGTACCCTTCATTGCCATTCTATGCTTGCTGTAATTCCTATGGGGCTATTACCATTGGGTGCTATTCTTCTTTGTGTGTGTGCATGCAGTCTCTCTGTGTGTTCGTGTATATACAGGTACACATGTGTGTTGTCTAGGTTAGGGTTTTACTACTGTGAACAGACACCATGACCAAGGCAACTCTTAGAAAGATAACATTTAATTGGGGCTGGCTTACAGGTTCAGTGGTTCAGTTCATTATCATCAAGGTGAGAGCATGGCAGCATCTAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGGAGAAGACTGGCTTCCAGGCAGCTAGGATGAGGGTCTTAAATCCCATGCCCACAGTGATATAGTTCCTCCAGCAAGTCCACATCTCCAAAGAGTACCACTCTCTGGGCCAAGCATATTCAAGCCACCATATGTGTGGAGGCTAGATGATAACCCTGCCAATGCCTCTTTCTTTTGAGACAGGGTTTTTCCTGGCCTGGAGCTCATGGAACAAAGTAGGCTGGATGTTGAGTGAACCTAGGGATTCTGTTTTGTCTCTCCAGCAGTGGGTTTGTAAATATGCACCCCAACACACAGGTTTTTGTTTTGTTTTCTCTTGTTTGTTCCTTCTATTGGCATTTTGGGGGTTGATCTAAGGAGTTCCAAACTGACTTTGCTATCTCCAGAGAAGACAGCTTCGGTCCTTTGTACTGTCACTGTAACATATATTACATTTCTAGATGTTTCAGGACCATGATATGCATTGCCTTATACATCTCATATTTAAGTTAATTAGGAAGAGAAAACAAATTACACTACCTTTTATAATTACCTGAACAGTTACTTCTGCCAGCATTTTAGAGGGCGGAGCCACACCACTGCCTGAGCACTCTTTACAACCTCTTTTTAAAGATTAATAAAGGTAATGATAGCTTTAATGGCATAAAATTCACATGCTCTATAATTAATCCTTGTTTGTTTTGAGACAGGGTCTCACTGTGTAGTTCTGGCTAGCCTGGACCACGTTAGAGCAGGATGGCCTCACACAGAGATCTGCCTGCCTCTGCCTCCCGAGTTCTGGTATTAAAAGTGTTTACTACCATGCCTAGCTTAATTTTAAAAAACTATGTGTATGTATGTATGTATGTGTTTGTGGGTATTATATGCACATGAGAGTGCAGGTGCCTGTGTAGTTTAGATTAGGGGCATTGGATCTCCTGGAGCTGAAGTTATAGGTAGTTGTGAGCTATCTCATGTAGGTGCTGGGAACTGAACTTGGGTCTTCTGCGAGAGCAATCTGAGCCATCTTTCTCTAGCCCCACAACTTATTTTAAACTTATTTTATTTTATTTTCCAACAAGGAAACTCCACTCTATCACAATTCATTTCCTAGTCTCTTGCCCAGGTTTGGGCTGAGCTCATCCAGTTTTTGTCTCTGTAGGCTTGGCTGCTTGAAAGGTTTCAAGCACATGGAATCACAGTATGTGGTGCCTTATGCTTAGCTTCTTTACTCTCAGCCGTGTTCAAGTTCCATCTGTGCTGTGGGATGCCTTAGTATCTTCTCCTAAGGGTGAAGATTATCCCCCTCTAATATTTCTCATAAGCCAAGACTGATAGCAACATATTTTCCTCAATCTTCTTTAAATCTGGGGATCTTTTTCACTTTGCTTTTTAAGGTTAACCTTGTGGTATAAGACTTGACATTTATTTTCAGCACAGTGCTGTGCCCCTATCTTCTGACCACCAATCTATTAGAAGTCAGCTGTGAGTGTTACTGGAATTCTGCATAGGGTGAGGTGGGTTTATTTTTGCTTTTTTTTTTTTTCTCATTTTGCTTTTGAGATTTTTGTTTGTTCATTTGGTTTGGTTTGGTTTGATTTGATTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGAACTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCGTGCGCCACCACGCCCGGCTCCTTTTGAGATTTTAATCTTTGACTTTGCATCTTTCCCTCTGTGTTTGTCCTATTTAGAATCACAGTGCTTATTGGATGTGTACATTGTTTCTCACCAAGTCTGTGGGCTCTCCTACCATTCTCTCTTCATCTTTCCATTCTCTTCTCTGTCTGGGGCATCCATTGCATGTGGTTTCAGCCTTCAGTGGTGTCCAACCTTCTGCATTCTTTTCCCTCTTCAGGTTCTTAATTCATTCTTCTCCAGGTTTGCTGATCATTTCCTTCTACCAACTCAGGCAAACCTGATAAGTTTAACATGAATTATTGTACTTTTTATCACTAGATTTCCACCTCTTAAGTTACTCCTTGATGAAAATTCATCGTTCTGCCTTCCATTATTTTTTTAATTGTACAGTTTTTAAATTTTGCTTTTGTTTAAAAAAAGAAATGTATCTCTTTGCGCACGTGGGTACATGTGGAGGTCAGAAACATCTTGTAGGAGTAAGTTCTCTCCTTCCACTGTGTGGGGCCTAGGGATCAAAATCAAGTCATCAGGATTGGCAGTAAACATTCTTACCCACTGGGTCATTTCACAGGCCCTTCTGCAATTTTCTTAAGCCTATGAGCTGTGTGTTGTGGGGTAGCCCCATCTTTGAGTGAAGTTCTTGGGAGAAAGCATCAATTACCCAAGCCAGGAGCTTGTGAGGAAGAAAGTCAAGCTTGTTCAGGACTCACAGATTCTGATTATTATCAAGAGAAAGTTGTTTCTATTGTTTATCAATGTTTAAAGCTTATATTTATTGATTGATTATATGTGCTTAATCATATGTGCATGGGTGCCATGTGTGGAGTTCAAAAGGCAACTCATGAGTCAGATATTTTCTTCCACTTAATGGGTCCTGGGAATTGAATCAAAGGGTCTAAGGCAAGTGCCTTTATGCCCTGAGCAATCTCACTGGCCTGTTAACTGTTTTAATATGTGTGTGGGTTTTTTATTAGTTTTAAATCATTATTTACTTATTTATGTTTACCTCTCCATCTGTCTGTCTTGTGTGTGGACACATGTGAAATGAGGGAGGGAACAGCATGTAGCAGTCAGTTCCCTGTTTCCACCGTGCAGGCCCCAAAGATGAATGAATCTAAGTTCTTCAGACTTAGTGTCAAATTCACCAACTGAGCCGCCTTACCAGCCTTACCAGTTGGTTGGTTTTTTGATTCAGGGTCTTTCTGTGTAGCCCTGGAAGCCTTGGACCTTACTGTGTAGAAAAGTCTGGCCTTGAACCCATGGAGATCTGCCTGTCTCTGCTGCTCTGTATTTATTTATTTTAAATTATTCAGTTTCTTCCTTTGCTTTTTTTCAGAGGTCTTTTTCTCTCTCTGGGCCTTATAGTTTGTTTTCACCATGTTCACAGAGGCAGGTAGAAGGCCCAGAGGATCTTGTTAGGTCAGTCTTGTTGAGGCCTTTCCCTGTGTGTTTTCTAG
Seq C2 exon
ACCAAGTGGACAGCTCCTTTGGCATCTGTGTGGTGAAGGATGACACTAAAATCAGCATCGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-Zfp541:NM_001099277:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: