GgaINT0002392 @ galGal3
Intron Retention
Gene
ENSGALG00000022619 | ZNF541
Description
NA
Coordinates
chrUn_random:732304-733123:-
Coord C1 exon
chrUn_random:732799-733123
Coord A exon
chrUn_random:732368-732798
Coord C2 exon
chrUn_random:732304-732367
Length
431 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTGGTTTTCACACCTTTCAGACA
3' ss Score
6.94
Exon sequences
Seq C1 exon
GTGACCCCCAAGGAGAGCCAGGATGGGAAGAGCCCTCAGCTCAGCTCGCACCCGAAGAAGAGGAAGCGGCAGATTCTCCCCAAACCCCTCTTCATCCCCCCCCCGCCGCCCCCCGAGGCGCAGCCGGGCCCTGGGGGCTGCTACCGCAGCAACCTGCGCTCCCCGGTGCTGCTGATGGACCGCCTGCTGCGGGACCTGCTGCAGTGCTCGCCCTACACCCCCCCGCCCATGCTCAGCCCCGTCCGCGAGGGCTCGGGGCTCTACTTCAACGCCGTCTGCTCATCCACTGCTGCAGAGCCTTGTCGGCTCTTGGGCAGCGTGCTGG
Seq A exon
GTAAGGGTCAGTGCTGGGGCTGCGCCAGAACAGCTCCCGAACAGCACCGCGGCACCCGCGGATCGGGGGCAGCTTCCTCTGCTCTGCTCTGCCTCCCGTGGGGCTTCGGAGGCTGCGGCGTGGGGAGACCCGGCCCTGCTGGCCCCAGCTCTGGGCACGGCTTTGTGAAGGGCGTTCAGATGTGAGTTCCAGCTGTTGCTCCCCGTTGTGGGCCGTGGAATCTGTTGGGGTTTTGAGGAGCGAAAGGCAATGTCTGAGTTAATTAGGGGCCGCTCGCTCCCCGCTTGGCTTTCTGGCCTGGCGATTGTGGGTGGTTCCCGGGCATTCTCTGGGATGAGGGAACTGCGGGAGAGGAGTGGTGTGCCCAAGTGGCAATAGAAATGAAGTCCTGGCAGCGCCGTCCTTATCCTGGTGGTTTTCACACCTTTCAG
Seq C2 exon
ACAGAATGGACCAAGACTTCGGGCTGTGCCTCATGAAGGACGGCACCAAAATCAGCATTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619:ENSGALT00000036197:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGAGCCAGGATGGGAA
R:
AGCCCGAAGTCTTGGTCCATT
Band lengths:
342-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]