HsaINT0187582 @ hg19
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48036166-48041753:-
Coord C1 exon
chr19:48041399-48041753
Coord A exon
chr19:48036230-48041398
Coord C2 exon
chr19:48036166-48036229
Length
5169 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TTTCACTCTGTGCTTTCTAGATC
3' ss Score
10.11
Exon sequences
Seq C1 exon
ATGGAGTGGTGCAGTAGGTGGCTTCAGGCGACCACCTGTGGTTCTAAACTTCTTCAGGGACAAGAGAAAGACGGGGAGGAGCGAGACAGCAAGGAGAGCAGCCAGCAGAGAAAGCGGAAGAAGCGGCCCCCACCCTCCACGGCTGGGGAGCCTGGCCCTGCAGGATGCCACCAGAGCCGCCTGCGGTCACCCATGTTCCTGGTGGACTGCCTCCTGAAGGGCTTATTCCAGTGCTCCCCCTACACACCACCCCCAATGCTCAGCCCCATCCGGGAGGGCTCTGGGGTGTACTTCAACACCCTCTGTTCCACGTCCACTCAGGCCAGCCCTGACCAGCTCATCAGCTCCATGCTCG
Seq A exon
GTGAGTGAGGCTGGGGCACTCACTCTGTGATCCCAGGGTGGATTGCCTGCGGACCACAGCCACTCTACCTTGTAGCATTGGGTTCAGTGATTGTCTCCTGCCTGGGTGTACCTAGTCTGAGGGTTCCTTTGCTATTCAGATGTGCCCCAGGACTGATCTAAGTGCCTTCTAGTGCATAGAATTTTACAGCCCGAAAGAAAACGTAGAGGCCATTTAGCCTGACCATGCTTCTGCCTGCCCTTCTGTGTCATTTTCTTTTTCTTTTTTGAGGCAGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTGATCACAGCTCACTGCAGCCTCGATCTCCTGGTCTCAAGAGATCCTCCAGCCTCAGACTCCCAAATAGTTGGGACTACAGGTGCGCATCACCACACCTGGCTAATTTTTTATTTTTCTTAGAGATGGGGTCTTGCTATGTTGTCCAGGCTGGTCTCGAGCTCCTGGACTTGTGATTTTGCTGCCTTGACCTCCCAAAGTACTGGCATTAAATGTGTGAGCCACCCTGTCCAGTCTGTGTCATTTCCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTATCACTCTATCACCCAGGCCAGAGTGCAGTGGCGTGATCTTGGCTGACTGAAACCTCCAACTCCCAAGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGTGCGCCATCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTGGTCTCGAGCTCCTGACTTCCAGTGATCCACCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCTGGCCTGGCCTATGTAATTTTCCTAACAGATTTATTGAGCTGTACTTCACATACCATGCAAATCACCCATTTAGAGTATGCAGTGATTTTTAGGATATTCACAAGGCCGTGCAACTATCACATAGTCTTAATTTTAGAGCACGCTTAGCATCCCCAGAAGAAGCCAGAGCTCATTAGCAGTGACTCCGCCCATATCCCCACAGTCCCTTCTTCCCCCAGCCTGGGCACCCACTCATCTGCCTTCTCTCTTTGGATTTGCCTATTCAGGACATTTCATGTAAGTAGAATCATACAATATGCAGCCTTTTGTGTCTAGTTTATTTCACTTGGCATGTTTTCAGAGTCCCTTCATATTGTAGTGCATATCAGTGCTCAATTCCTTTTTATGGCCGAACATTTTTCCCTTGTACAGATGGGCCCCATTTTGTTTATTTATCAGTTGATGGACATTTGGGTTGTTTCCACTTTGGGCTATTATGAATAATGCTGCCATAAACATTCATATAGAAATTTTTGGGGTTTTTTTGGGAGACAAGGTCTCACTCTTGTCACCCAGGCTGGAGTGCAGTTGTATGATCACAGCTCACTGCAGCTTCAACCTCCTGGGCTCAACTGATCCTTCTGCTTCGGCCCAGAGTAGCTGGGCCTACAGGCATGCACCCCCATGCCTGGCTAATTTTTTGTAATTGTTTTTATGTAGGGAGGGGGGTCTTGCCATGTTGCCCAGACTGGTCTCAAACTCTGAGGTGGGCCAGGCATGGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCTGGGGCGGGTGGATCACCTAAGGTCAGGAGTTCAAGACCAGGCTGGCCAACATGGCAAAACCTCGTCTCTACTAAAAATATAAAAATTAGACGAGCATGGTGGCGGGTGCCTATAATCCTGGCCACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACTGAGGGTGCAGTGTTGGGAACAGGCCCCCCAAAATCTGGCCATAAACTGGCCCCAAAACTGGCCATAAACAAAATCTCTGCAGCACTGTGACATGTTCATAATGGCCATGACACCCACGCTGGAAGGTTGTGGATTTACCGGAATGAGGGCAAGGAACACCTGGCCGACCCAGGGCAGAAAACTGCTTAAAGGCGTTCTTAAACCACAAACAATAGCATGAGCGATCTGTGCCTTAAGGACATGCACCTGCTGCAGATAACTAGCCAGACATATCCCTATATTTTGGCCCATCCCTTTGTTTCCTGTAAGGAATACTTTTAATTGATCTATAATCTATAGAAACAATGCTTATCACTGGCTTGCTGTCAATAAATATGTGGGTAAATCTCTGTTCAGGGCTCTTAGCTCTGAAAGCTGTGAGACCCCTGATTTCCCACTCCACTCCTCTATATTTCTGTGTGTGTCTTTAATTCCTCTAGCGCCGCTGGGTTAGGGTCTCCCCGACCGAGCTGGTCTCGGCAGCGGAGGTTGCAGTAAGCCGAGACCATGCCATTTCACTTTAGCCTGGGCGAAAGAGCTAAATTTGGTCTCAAAAAAAAAAAAACAACTCTGGGGTGAAACAGTCCTCCTGCATTGGCCTTCCAAAGTGCTGGGATTAGAGGCCTGAGCCACCACACCCAGCCTTATGTACAGGTTTTTGTGTGGATTTATGTTCTCAGCTCTCTTGGGTAGATAACTAGGAGTGTAGTGCTGGGTCATATGGTAACTCCATATTTAACTGTTTACAAACTGCCGGATTGTTTTCCAAAATGGCTGGGCCACTTTAAATTTCCAGTAGCAGTATATGAACATTTTCATTTCTCCTCCTTCTTGTCAACACTTGTTATTGTCTATCTTTTTAAGTATAACCATCCTAGTAGGTGTAAAGTGGTCCTTTTGCAGGACAAACATTTCTAATTTTCATGAAGCCCAATTTCCTTTCTTTTGTTACTTGTTCTTGTGGTGTTATATGTGAAGATTTGCCTGACCCAAGTCATGCAGAGTCACTCTTGTTTCCCTGTAAGAGTTTTGTAATTTTGGTCCAGGTGCGGTGGCTCACGCCTGTAATGCCAGCACTTTGGGAAGCCGAGGCAGGCGGATCACGAGGTCAGGAGCTCAAGACCAGCCTGGCCAACATGGTGAAATCCCGTCTCTACTAAAAATACAAAAGAATTAGCCGGGTGTGGTGGCAGGCACTGTAATCCCAGCTACTCAGGAGGCTGAGACAGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAGGATGGCACCACTGCACTCCAGCCTGGGCAACAGAAAAAAAAAAAAAAGAGCTTTGTAATTTTGACTCTTAGGTTAGGTCTGTAATCAATTTGAAGATAACTTTTATATATTACATGAGGTAAAGGTCCAAATTCATTTTTTTGCATGTGTATATGCAGTTCTTCCAGCAGCATTTTTTGAAGACTTCCCATTGAATTGACTCAGCACAATTCATTGTTAGAAATCAATTGACCATAAACGTGTGGGTGTATTTCTGGGTGTTCAATTCTATTGATCTGTATACTTATCCTTATGCCAGTATCACACTGTTTTGATTACTGTAGCTTTTAACTTTTGTTTTTTTGTTTTGGGGGGGTGGTTTGGAGGGGTTTTTTTTTGAGACAGAGTCTTGCTGTGTCACCCCAGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAGCCTCTAACTCCCAAGTTAGCCTCCCACTTCAGCCTCCCGAGTAGCTGGGATTACAGGGGTACACCACCACACCAGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGTTATGTTAGCCAGGCTGGTCTTGAACTCCTGACTTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCATCAGGCCTTTTTCTTTAGATATTTCTTTCTGTCTCTTTCTCCTTTCCATCTGGTACTCCTGTTACATGTAGCTGCTGTACTTAATGGTATCCCACATTTCTCTGAGGCTCTCTTTATTTTTCTCTTTGTTCTTCGGATTCCATAGTCTCTACTGATCTGTCTTCAAGTTTACAGATTATTTTCTTCCTGTCAACTCAAACCTATTGAGCCCCATTTTGGTTATTTTATTATTTTCCTCAACAGCTTCACTTGCCAATATTTTACTTTCTAACCCCAGAATTCCCATTTGGTTCTCTCTTTTTAATAATTTCTACCTCTTAATGATATTCTGTCTATGATGAGAAATTGTCATTATACCTTCCTTTAATTCTTTAAGCATGGGAGCTGACAGGAGAGGCAGCCCCTGTCTGGGCTGCACCTACCTGGAATAGAACCCTTGGAGCTGGGAGCTGGCTGGGTAAGGGAGCAGGTCACAGCTCAGATGCAACAGCCTCTTGTTCTTACCAATATTCAGTTGATTATTTTTTATTTTTTATTTTTTTGAGATGGAATCTCACTCTGTTGCCCAGGCTGGAGCACAGTGGCACAGTCTCGGCTCACTCTGCCTCCCAGGTTCAAGTGATTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACATTCCACCACGCCCAGCCAATTTTTGTATTTTCAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCGCCCACCTCAGTGTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCCCACCCGGCCTAGTTGATTTTTTTTAATGAATATTTCTCCAAGTGCTGAATGACCTTAGGACAATTTCCAGAGACTTTAGTGTGCTGTTTTTATATATACGTATACTTGTCATGAGTTAATTTGTTAGAGTTCCTTCCTCTACCTTTTCTGAAGTGCTGCCCTTTCCCATGGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACCGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTTCTGTCTCAGCTGGGACTACAGGCACCCACTACCACGCCCGGCTACTTTTTTTTGTATTTTAAGTAGGAACAGGGTTTCACTGTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGTGCCCGGCCAACCCATGGGATCTTAAAGACCCTGCTTTCAGCTGCGTCCACACAGGCAGGCAGAGGACCCTGTCGGTTACCTGCTGTCTGTCTTCTTGAGCCTTTTCACTCTGTGCTTTCTAG
Seq C2 exon
ATCAAGTGGATGGGTCCTTTGGCATCTGTGTGGTGAAGGATGACACCAAAATCAGCATTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-ZNF541:NM_001101419:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)