HsaINT1047527 @ hg38
Intron Retention
Gene
ENSG00000198131 | ZNF544
Description
zinc finger protein 544 [Source:HGNC Symbol;Acc:HGNC:16759]
Coordinates
chr19:58246301-58246794:+
Coord C1 exon
chr19:58246301-58246427
Coord A exon
chr19:58246428-58246745
Coord C2 exon
chr19:58246746-58246794
Length
318 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AATCTGATGTGATCTCTCAGCTG
3' ss Score
5.55
Exon sequences
Seq C1 exon
GCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTGG
Seq A exon
GTAAGTGGCTGTGCTCATGGAAGGAGGTTCTACCCCTAGGACTCAAAGCTGTACCAAGTTCTGAAGGGTGTTCTGGGATGTGCTGGAAGATACTGGAAGCAGGTCCCTTTCAGGTGCAGTTCCCAGGGGTTGCCCTTCATTCTATCTCTGGGACAGGTTTGTGACTTGTAGTCCTAACAGTGGGGAGTTTCCTCGGGACAGCACTAGGGGCTGAAGCTTGGACCCAGGACATGGTTCTTGGTGTCCAAGCAGAGGGGCAAGTCCTTTTTCCGTCTTTGACCAGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAG
Seq C2 exon
CTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198131:ENST00000599227:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.550
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains