HsaALTA1064320-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198131 | ZNF544
Description
zinc finger protein 544 [Source:HGNC Symbol;Acc:HGNC:16759]
Coordinates
chr19:58246301-58246794:+
Coord C1 exon
chr19:58246301-58246427
Coord A exon
chr19:58246711-58246745
Coord C2 exon
chr19:58246746-58246794
Length
35 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CTTTTTCCGTCTTTGACCAGGGC
3' ss Score
9.69
Exon sequences
Seq C1 exon
GCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTGG
Seq A exon
GGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAG
Seq C2 exon
CTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198131-13-17,13-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.430
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCACACAGGAGGAGTGG
R:
GCACAGGTCCTCTTCTTGCTC
Band lengths:
121-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains