HsaINT1047787 @ hg38
Intron Retention
Gene
ENSG00000186814 | ZSCAN30
Description
zinc finger and SCAN domain containing 30 [Source:HGNC Symbol;Acc:HGNC:33517]
Coordinates
chr18:35263945-35267679:-
Coord C1 exon
chr18:35267476-35267679
Coord A exon
chr18:35264456-35267475
Coord C2 exon
chr18:35263945-35264455
Length
3020 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGAGCATTGTCCACCCTCAGGAG
3' ss Score
5.87
Exon sequences
Seq C1 exon
CGCGTCAACCGCTTGTACTCTGCGATGCCCCCGCCAGGTCTGAGCCGGACCCGCGCCCCTCCTGCGAGACACGACCCGCGCCTGCCACAGAGCTGCGGTCCTCCGGGCTCCTAGAGGGGCACTCTCCCACTTCCGGCGCGCGTGCGGCCGGGCATTGTTCTCGCTCCCGGGGGTGGGTTCCCGCCGCCGCCGGTAGAGCGAAGG
Seq A exon
GTGAGTGGGGCGGTCCAGCAGGGCGGTCCCGGGTGCTTCCCAAACCGCCCCTGTCCCGCATCCGGCCTCCGCGCCGCCTTTCTTCGACCCCTCGGCCACAGGCCGGGGCTCGGCTGTATCTGGGGTCCCGCCCGCCTCTCCGTCGGTCAGTCCCGCCATCCATTTCCACTTGCCCACTCAGCCACCCCGCCTTTTTGGTCAGCTGACTCCTCAGGCGCTTACCCAGCGTGTCTTGTGTCGGGCTGCAGGCTCAGGAGTCTGACACTCGCCAATGGGCTCCTTCCTGCCACTTCTCACGTGGCCAAAGCTCGGTTTTGAGACGGGTCTCAGCCTTCCTCTTGGCTCCCCGAGGAAGCCAAGAGGGGACAGGATCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCTGGACTCAAGTGATCCTCCTGCCTTTGGCCTCCCAAAATGCTGGGATTACAGGCATGAGCCACTGTGCTTGGTCTCTAGTATTTTACACTAAAAAATTAAGAGAAGGCCCTGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTGTACTAAAAATACAAAAAATTAGCCAGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTTCAGTGAGCCGAGATAGCGCCACTGCAGTCTGGCCTGGGCGAAAGAGTGGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGGAGAAATATCCCCAGGGTTCTTGTGTTTAGATATGTATGAAAAATCTATTAATACCTGGCAAAGCACGGTTTAGGAGACGCTGCTTCGTAGGCATCTCAGACCTAACTTTCTTAATGAATAGCTCAGCAAATAGCACCATCATCCTCTAGTCACAAGGGCCAACCACAAACTTGAGTCCTTGACCCCTCTCTCTTCCAAGCCCTTATACGGTGTGTCAAGTCCTGTCAAATCTCCCGTCTTTTTGTCTTTTGCCTCCCATAGCTCAGTCTCTCACAGTCTCTCTTCTGAATGGTTGCAACAAACCCCTTCCCATGTCTTCTCCACGCCACTCTCTGGGTGGGCACACAGACCTTCCAGCCATCACTGTGGCCATGGGGATCAATGCAAACTCTGTAGTTCAACCTCTCAGACCTCCTCTCTCACCATTCATTAACTGTGCCCCAGGGTCTGGCACCGGGTTCTTAACCTGGCTGCTCATCAGAAGCTCTTGTGGCACTTACTAAAGCCCTGTCCCATGGAGATTCTGACTCAGGAAGTCTGCCTTGCGGTTCATGTTTCATGGCTGATTTTGAGCCGTAGTCAGAAGTGACAGCCATTAATCTGGTCTCCCCAAACTACCTTCAGTTTCCTCAGTGGGCCACATTCTCTCATACCCATTTTCACTTTGCCTGGGTGACCTTCCTCTCCATCTCACTCAGCTCACTCATATCAGACTCTGCTGAGATGTCTCCTCCAGGCAGCTCTTTCTGGCTCTTCCCATCCCTTTCTCCTTGGTCTTGGTCAGTCATCTTTCCCTTGTGCTACCTTGTCTACTTCGCTCCGTCCTTGGATTTATCACTGTGTTTACGTGTTGCTTTCCCATAATAAACTAAGAGTCCTTTGGTACACATCTTTTAATTCTGAGACTGCTCTTTGGTACGCTATCTAGCACAGAGTAAATGCTGAAGTATTTGTTGAAAGAATCCATTTTTCTTTGTGCTGTTTCAGAACCTTGCGACTTAAAAGTCAAGAATAATTTTTCCTTGTTTCTACATTCACCTTGCCCATTCTCCATGATCCCTTCCTAACATTTTCACCATCATTTCTGATTTAGTATCAGCCAAGATTGTCCTGGGCATCAACCCATTCTGTAATAAAAAGAAATAAAAAGAGCAAGTACTGTAGAGTTGCAGCCTGGGTTCATGTCTCGACTTTGCTATTTACCAGTTTGTAGCCTTGGACAAATTACTTGGCTTTTAAGAACCTTAGTTTCCTCATTTGTAAAATTGAGATGATAATACCTGATGGTGTTATTGTCAAGCTCCAGTAAAATAGTATTTGTAAAGTGCTTGGCCCATAGTAGGTGTTTATTAAGTGTGAGTTCCCTTCTTTTGGGATGCCCCATAGCATAATAGAAAGAGCTAAAGACTTTGGTTGCAGAGCCCAGTTCTGCTGCTCCCTGGCTGTCTTTGGTCAACTTATGACTTAGTAGCCTCGTTAGGAAAATGGGCGTAATTTTTTTTTTTTTTTCTGAGGCGGAGTCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCCATCTTGGCTCACTGCAAGCTCCCCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTATAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTTCTGACCTCGTGATCCTCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCGTGCCTGGCAAAAATGGGCATAATTTTGATTGTCCTTATAGAGTTGTTAGGAAAAGCATATAAAATTTATGTTAAGTATCAAGCTAGTGATCAATAAAATGGTGGTTATTTCTGAGATGTAATCATATACTATAGTGCTTTTCTTGCTCTCTATAATCTACAAGCACTATTTTATTATCCCTAATGTTGTTCCTAACAGTATTACTAAAGGCCAAATTGATTTCAGCCATACTAACATTTTTCTTTCACATCCTAAAAAAATCCTGAGTCATCTATAAATGTATCATTTATGTGGAAGTGCCCTGTTAGTCAGTTTTCTTTACAATGCTATGCTCCCTGGCAACTGGGCTTCAAAAACCTGTATTTATATTCCAAGTACATTATTTTCCCTGTGTAACATGAGCATTGTCCACCCTCAG
Seq C2 exon
GAGCGTCCTGGGGAGTTGGAATTCAGAAGGAATCTCTCAGACGCAAATCTCCATCTCCTCCCTGCCTCACCTGGGCAGCCTTTTCAGACTGTCTCTGCCCAGAATGTCAGGAGAGGCCACAGTCTTGGCCTACCATGCTCCAGAAGAACAGGAAGGACTTCTAGTTGTCAAGGTTGAAGAAGAAAATTATGTTTTGGACCAGGACTTTGGCCTTCAGGAAAACCCCTGGAGCCAAGAGGTATTCCGGCAGAAGTTCAGGCAGTTTAGTTACTCTGACTCCACTGGCCCTCGGGAGGCTCTGAGCCGGCTGCGAGAGCTTTGCTGTCAGTGGTTGAGGCCGGAGGTGCACTCCAAGGAGCAGATCCTGGAGCTGCTGATGTTGGAGCAGTTCCTGGCCATCCTTCCTGAGGAGCTGCAAGCTTGGCTGCGAGAGCATCGGCCAGAGAATGGAGAGGAAGCTGTGACTATGCTGGAGGAGCTGGAAAAAGAACTGGAGGAGCCAAGGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186814:ENST00000420878:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.181
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=69.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains