HsaINT1048106 @ hg38
Intron Retention
Gene
ENSG00000197062 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr6:28267359-28272339:+
Coord C1 exon
chr6:28267359-28267453
Coord A exon
chr6:28267454-28271853
Coord C2 exon
chr6:28271854-28272339
Length
4400 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCTTGTTACTATAATTTTAGGAG
3' ss Score
6.45
Exon sequences
Seq C1 exon
ATGAGAGTGATGAAGCTGTGGATCTGGTAAACAGAGTACAACCTTCTGCTGCATATTTTTCATCCATTCAGCGCAATTTTAAGTAGATATTAAAG
Seq A exon
GTAGGCGCCACCGAGAAGGTAATATTTGAGCAGAAATCTGAAGGAGGTGGGTGGAAAGACCTAAGTGGCTTTTGCGGTCAGGAACTTTCTAGGTAGAGGGAATAGCAAGTGCAAAGGTCTTAAAGCAGGAGCTTGCTTGGCATATTTGAGGAATAACGGGGAGACCAGAGCGGTTGGAGCAGTGAACAAAGGCGACCTTTGTAGGGAATGATGTCAGAGAGATTGGGGTATGGAGAGGAAGAGTGTAGAGGAAATGAGAACTGTATCGTGTAAGGAATTTTGTCTTTTTTTGGTGTGTGTTTTTGGAGGATTTTGAGCAGAAGAAAACATGATCTGACTTATGTTTTAAAGCTTCTTTACTTGGAGACTCATGATGATAATAGATTGTAAGTGGGCAAGAATGGAATCAAGAAAACTTAAAAGTTAAGAGTAATTTTTTAAAATTCCAAGTAATTCAGGTGGGAGATAAGGATATCTTGAGCCAGTGATCAGATTATGATCTGCTTTGAAAATAGAGACAATAATATTTGCTACTGGGTCAGATGTAGGGTGTGACAGTAAGAAGGCAAATATAAATCCAAGGTTTTGGGCCTGTGGGTGCAAGAGATACTGGAGAAAAGATCTGAGGTTTAGCTTTGGTACCTCGTGTAAGTTCTTCAACTCTCCCCGTCTCAATTTCCTTCTCTGCACGAAGAAATTAGGAATAGTGTCTTCTTTATAGGGTTGTGTGAGGGTTAAATAATTAATATATGTGAAACATGTAGTATAGTTGTCCTGGCTCATTGTTTTATTATGCTGAGACATGAAGTGTGAGTGGGCATTAACAAGAAGAAAATTGGAGGGTTGGAGGGTGGTCCAAGCAGAAGGAATAAGCTGTGGAAGGGCCAAGGAGCAAGAAGGAGTATTGCAAATTTGATGAAATAAAGTACTTTATTAGATCAAAAAACAATGTAAACCATATTAAATGTTTTGAACTTGATCCTAAGGGTAATAATCAGCCATTATATGTAACAGGCATAGCAGGGACATAATAATATTTCATATCCTCCTTAGAATGATCACTGTTTGCGTGTGGAAAATAGATTGGTGTCTCAGACCAGTCTGTTTGTCACAGTGGTCTAGGTAGGAGAAGACAATGGCAAAGGGGATGAGAAGTGGATTGATTTGAGAGATATTTAAGCAATAGAATCAATAGAACTTGATTGATCAGATACATGAGATATGAAAGGAGGAAGGAATGGTCAGTTTTCTGGCTCAAATAGCTGGGTAGATGGAGCTCCTCCCAAAACAGTTTATCAAATTATTTATTATATATTGTGTTTGATATATTTAATCACATTATAGAAATGAACTCACCACTAATTCAGCCTCATACCCAGCCAGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTCGGGAGGCTGAGGACGGTGGATCACTTGAGGTCAGGAATTCGAGACCAGCTTGGCCAACATGGTGAAACACTGTCTCTGCTAAAATTACAAAAATTAGCTGGGTGTCATGGCAGGCATTTGTAATCCCAGCTATTCGGGAGGCTGAGGGAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTAAGCCAAGATTGCGCTGCTGTACTCCAGCCTGGGCAACAGAGGCAGACTCCATTTCAAAGAAAAAAAAAAAACACATCATACCCTATATATACATATCAACATCATACCACATGTTTATTTATATACCAATACTGATATAGATACCAGTATATATATATGTATGTGGCATAGATATATACTGATATGGGTATAGATATCTCTATAGATATAATAATATGAATACAGGTATATATAAAAAATACGAATACAGGTATATATACCTAAACAATAATACGAATTATGTATATATATACATATGCCTGTATTTGTGTCATTATTTGTATAACTAGGGTATCTATATCGGTAAAGATAGGTAGAGATCTAGAAAGAGATTTACTATAGGGAATTAGCATAGGTCATTATGGAGGCTGGCAAGTCTCAGTATCTTCAGAGTGAGTTTTCAGGCTGGAGACCCAGGAGAGCAAATGGTTTAGTTCCAGCTCAAGCCCAAAGGCCTGAGAACCAGGAGAGCTGATGGTGTAGTTCCTGTCTGAAGGCCATAGGCTTGAGATTCAGTAAGAGCTGTTTTAGTTCCAAGTCTGATGGCAAGAAAAAAGCTGATGATTCAGTTTGAAGCATTTTAGACAGGAAGAATTCTCTTACTCAGGGATGAGTCAGCCTTTTTGTTCTAGTCAGACTTTTAACTGCTTGGATGAGGCCCACCAACATTATGGAGGGCAGTCTGTTTTAGTCAACAGTCTACCAATTTAAATGTTAATCTCATTCCAAAAACACCCTCACAGAAACATCCAGAATAATGTTTGACCAAATATCTGAGCACCCTGTGGCCAGTTAAGTTGACACATAAAATTAACCATTACAATACCAATCTTTTATTTTCTGGCTAATAATCATCACTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTTAGCCTCCCGAGTAGCTAGGACTACAGGCGTGTGCCACCACACCCGGCTCATTTTTTGTATTTTTAGTAGACACGGGGTTTCACTGATAATCATCACTTTCTTGGACTTTTTTACTTATATTAAGAATACTAGGAATTGGCTTTTTAAAGTTTAAGTTCATTTTGACTAAGAAAAATAATTATCAGCTGGGAAATGTTAACTATATACACATTCAGGAATATATAACAGCAAACTGTTTGGAGGCTAAGCCACTGATTAAGTGAGCCTTCTCCCGTTCTCCCACTTACCGCATGCACATTGATTCAAAGGCATGTGTCAGCAGCTGACAGATGGTGTTTCACTGATCTATAGGGATACTCAAGCATAGTCAAAATCAAGAATGCTAAATCCCCACATACCAAGGGCCTGCCCCAAAGGATGGTAGGGAATTGTCTGAGTTCATTTTTGACATGTTGGATTTGAGAGGCTTCTGTAGGGTATCCTGGTCCCAAATAGGCAGAAGGAAATTCAGGTCTGACACTTGAGATATCTGACCTGAAGAATAAGGAAATCATCAGCATAAGGACAGTAATTGAAGTCACAAAAATACTTATACTCTACATTAGCCCTTTCTAGTTTCTGCCCTATCTTTCTTGTTCCATTCAATGTATTACTTTTTTGAAATTTGTCATTTATGCTCACTCTCCATTTTCTCATTTCCTATGGCAGGCTAGCTATTCTCACTACCAAAATTACCTTCACAGAGGTCACTAATGACATCTTTGTTTTTGAATCAAGTGTCTATGCCAGGTCTTAGATTAATTCACCATCTTATAGCATTTCACACTCTTGAACACTGTGCTCATATCATTTCCCTTATAAATCAGTGAATTCCTTCTGTTCTTTAGAATTATCTCATTTACCTCAAAACTTCTGTGAATTAGGTATTATCTTCATTTTACAAATGAGTAAACTAAGTCCAAAAGGATAAGTTACTTGCCCCAGGTCACAACATGTAAGTGACAGGGCTGGATTGGAACCCAGGCCTGTCTAAGGCCCAGGGTCTTTCCACCATTCCACATTTACAGAAATAGACCTCCTTGACCTTCTGGATACTATTGTCTTTTTTCTCCTCCTACCTTTCCAGTTCCATCTCACTTCTGTTTCTTACATGTAGATGTTTCCCAGGATTCCGGCTCCATATAACGTTTTCCCAGCCATAACTAACTACTACACTGAACATCCAACAGCTTTATGGTGTCTTTTTTGTCTGAAAAAACTTTCTCTATTTCCTTGTCTTTCACTTGTCTTTTTTCTTTTCTTTTTCTTTCTTTCTTTCATTCTTTTTCTCTCTTTTCTTCCTTTTTTGATATAGGTCTTGCTCTGGTTGCCCAGGCTGAACTCAGACTCCTGGGCTCAAGCAGTTCTCCCTCCTCAGCCTCCCGAGTAGCTTGGATTACAGGCATGTGCCACCATGCCTGGTGTCACTATGTTGCCCAGGCTGGACTCAAACTCCTGGGCTTAAGCAGTCTTCCCACCTCAGCCTCCCAAAGTGCTGAGATGACAAGTGTAAGCCACAGTGCCTAGCCTCAGTTATTTTGAGGGCTACAAAATGGTGATTTTTCAAATCTATTATTCCTTCTACATTAGATGGTATTCTGTAAGATAGTTTTTTCCTTCTGTATGTATGTTTAGAAATGGTTGTTTTAGAGAGAAAAAATGGATAATAGGAAATGTATAAACCCAAGAAAATGTTACTGTTCTTGTTAGCAGTACTATTACTGTTTCTGTCACTCTTGTTACTATAATTTTAG
Seq C2 exon
GAGTGTCTCTGAAGATACAGTCCAAAGAAAGTTCTCCAAAACAAGGAGAACAGTCTGAAGCTGGGGATGGCAACAGCATTGGTGAGTGCCCATTCCCTGGCTCCCCTGAATCTGAAGAAGGAGGGGCTTCGGGTAGTGAGGGAGGATCACTACTCTACTTGGGAACAGGGATTCAAGCTGCAAGGAAACAGTAAAGGCCTTGGACAGGAGCCATTGTGCAAACAATTCAGGCAGTTGCGTTATGAAGAGACCACAGGACCTCGAGAAGCACTAAGTCGGCTCCGGGAGCTCTGTCAACAGTGGCTACAGCCCGAGACCCATACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTTCTGATCATCCTGCCTAAGGAGCTCCAGGCCCGGGTGCAGGAGCATCACCCAGAGAGCAGGGAGGACGTGGTTGTTGTTCTGGAGGATTTGCAGCTGGATCTTGGAGAAACAGGACAACAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197062:ENST00000619937:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.099
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains