MmuINT0178702 @ mm10
Intron Retention
Gene
ENSMUSG00000022228 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:MGI Symbol;Acc:MGI:3531417]
Coordinates
chr13:21449441-21453730:-
Coord C1 exon
chr13:21453578-21453730
Coord A exon
chr13:21449517-21453577
Coord C2 exon
chr13:21449441-21449516
Length
4061 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
TCTGTGACTTGTGTTTTTAGGAG
3' ss Score
9.83
Exon sequences
Seq C1 exon
GACGTGTGACTGACCCTGCGACCAGGGCGAGGGGGACGTACGGTGATCGGGTTCCAGCGGAGAGAGAACCCGCAAACTTGGGACTCTCGAGCGGAGGGTCTGGTTGATACACAGAAACTCTCCACACCTCGGAGCTGGGAGGACCAGAAGCTG
Seq A exon
GTGCGTGACGGAAGCTGCGGGGCATGGGAGAGGGAGGGAGCTCAGGACGTAGTTGGTGAGGCGGTTTCCTGCTGTTGCGCAGCTCAAGCTGACTGCAAGCTCCAGCGTATCTCCTACTTCAGCTTTCTGATGGCTGAGATTGCCAGCACTCCTGGGTTCTGTTGCTTTATTTTGTTGTGAGGGATTTTTCCCCCTTTTTTTGTTTGTTGTTGTTTGGTTTTAAGAGCGTTTCGTGAAGCCCGTGTTGGCCTCATCATTTGGCGGCGTATACTCTTAATTTGAACTCCTGTTTATCCTTCTATCTCCGAGCTCTGAGCTCATAAGCTGGAGCTGCCACACATGGCTTCTGCATGTTTAAGTAGTTACCACTGTAAGTAAATAGAATATTTGAGTAGATAATCCGAAATAGATGGGTAGACAGAGGCGGCTTTAAAAGGCATACGTGAGAGAACAGCGAATACAGAGGCCCTAAAGCTGGAGCTTGTCTGTCTTATTTAGGGATTAACGAGGGCACCAGGGTATTTCGAGCGCAGTGAATAAGATTGCCACAGAGGATAAGTAAGTGAACAAAGTGGCCATTTGGTTGTGTGAGGAACTTGGTCTTGGGTGATAGAAGGACATACTCAGACAGGTCTTGTAATTGGACACCCATAATGTGCATAGATTAGAGGATGAGCAGAAATGAAATCAAGAATGGGTTGCAAACCAAAGTTGGGTGCAATTAAAAACCTGCATCTGAGCATAGTGACTAATTTCTATAATCCTAGCACTTGGGAGAATTGCCCATTGTGGGCTAGGGAGTGAGAGCCTTGGGGAAAAGGAAAACTGGCAGGAAATCTGGCAGGAAGTGAAGACTGACTGTTGTAGTTGTGGCCAGGTGGATCCCACAGCTTTTGCTTCTGGATCAGATGTACACACACAAGAGAGAGAAGGAAAAAATAAATTCATAATTCGGGGGTCTGTAGATTTAAAAAAGGACCAAAGGTAAGTTCAGTCCACCGTTGGTGGTTCACGTCTTTAATCCCAGGTTTGGAAGGCAGAAGCAGTCAGATCTCTGAGTTCAAGGCCAACCTGATCTACAGGGCAAATTGTCGGACAAACAGAGCTACACAGAGAAACCCTGTGTGTGTATGGGGGAAGGGGTCTGGAGGGGGGGGGGGCAAAACCAAAAAAAAAAAAAACAAACCCCTGAAGATCAGCTTGGAAACCTGTGTAAAATCATAAATTCTTCAACTCTTCAAGTTTCGTCTGTAGTGTGAGGTCGTTCTTAGTGTGGTGTCTGTGGAGATTGACTAAGCAAGGGACGCACAGGTGGAGCAGCTCTGTTGGCTTGTTGACTGTGACATGAGCTGTGACTAATCAATAAGAAAAAGGTTAAAGGGTTTTCCCTGTAAGAGTGGGATATATAAGGAACCAAGAACAAACAACAGTGGTAAGTTTGGTCATTAAAGCATAAGGAAAATTTAGACCATATTAAATGTTAAACTTGATCTTGATGGTGATGGCAACTCATTGTGTGCAACATGCTTCATTTCCCCCGTAGGAAGATCTCAGGTGCAGTGTGGCAAGTAGTCCGTGTCGGGAAGACCAGCATTTAAAGCAGTGGTTCTCAGCCTTCCTAATGCTGCGGCGCCCCTTTAATACAGGTCCTCGTGTTGTGAGGTCCAACCACAAAATTATTTTCACTGCTATTCTATACCTGTAATTTTGCTGCTGTTATGAATTGTAATATAAATATTTTTGGAGACAGAGCTTTGCCAAGGGGGTCACGACCCACAGATTGAGAACCACTGAGTTGAAGTAAGAGACGTCTGAGTAAGAGAGCATGCCATCAAGAAAATACAAGGGTGGACATGAGGGATATGAAGCCGTAGAATCAGAAGAACTCAAGGTTGCTGGAGAGATGGCTCCGCAGTTAAGAGCACTTTCGGGTCTTCTAGAAGACTCAGATTCAAATCCCAACACCCACTGGAAACTCCAAATTCAAGAGATCTACACCCTCTTCTGGCTCTCTTCAGGCACACATGTGATGCACAGATATATGTGCAGGCAAAACATCCATGCACATTTTTGAAGAGAACTTGATTAATTATATACATACAGTATAAAAGAAAGGGAAGAGAATGCTCAGTCTTCTGCCTTAAATGGCAGGGTCACTGGAGTTCCTTCCAAAGACAGGTTAAACCACCACGGTGTATATGTATATATATCTAATCACATTGTAGAACTGAGTCGCCACTAATTTATGTGATAGGCCTGTATCAGAGTTCTTACGGCCTTTAAAAAGAGATTTGTTTTTTAAATTATTTATGTATGCCCAAGTACGTGCACTTGAGTACAGTTGTCCTTGGAAGCCAGGACGGTCCTCAGATCTCCTGGTGCTGCAGTTACTGGTGTTGTGAGCTGCCCAGCAGGGCTTCAGGGAGCCTCACTGGGATTCTCTGAAAGAGCAGGCTATTTTCTTAGCCACAGAGCCATCCCCTCAGCCCCTTTATTAGGTATATTTAAAGAAATAGGATCAATTTTTTTCTTTTATTGATTTTGGTCAACAGATGTCTAAAGAGATTTATTAAAATGCGAACATGACAGTTGAAAGAAGATTGTTTGGGAAAAGGATCATGGGGGGGCAACTGATCAAAATATATGTGTGTGACGTGTCATGAAATCCATTGTTGTACATAGTTAATAAATGCTAATTTTAAGAAGAATAGGAAAAATGCCAATGATTTATTACAAGGATTGTCTCATGATTATCAAGTCCTAAGATCTTGGGGAGATTTAGCAAGCTAAAAACAAAACAACAGATAATGGCATTATAGTGCAAGTCGAAACCCTGTGTGCCACAGAAGCAGGGTGTTTACTTTAAGTCTGAAGGCAAAGACTTAGGATCCAGGAGAACTGAATTCTCAGTTCTGAGTTGAAGGGAAACCCAAAACCTTAGTGTCTGACTTGAAGGTGCTACAGAGGAAGTCTCACTCATTTGTGAGAGGATGCGTCCTTTTGTTCTCCAACCTTCTGTTGATCTGGCAAGGCCTACTACATTGTGAAGGATAGACTGTTTTACTCTTGTCTACAGTCTGTTAACTTAAATATTAAATCTAAACTCATTTTAACCAAATATTTTCACCCAGGTGTCAGAAGTGACTTATAAACTAACCATCACAGTACTAACCTGATATTTTCTGACCAACAAACATCACATCCTTGGACTTTCTCAAGCCTCTATTAATAGGTCATGCTACTCTGAGCCTCTCACATCCTTGCTACTTGAGAGGTACGAATGGGAGGGTTGTTTCAGCTCAGACATATGAGGCCTCGTTGAGCAACACAGCAAAACCACATCACAAACAAACAAATACTAGTAATGGCTTTTAAATGTAATGATTAGGTTATAAGCTTCCTGGCTCGGCCTCTGGAATGTTGTGATGCAGACCTGAAGGACCCCATCTGCTTTAAATCTTTGCTGTTTTGTTTTTAATGCAAGCATTGGATTTCAAGTGGTTCACTTAGCTGTGTCTCCTTAATCTAGAACAATAACCTCCTAGCATACATCTGCTTTTTTGCTTTGGGGAAATTGGATTCATGCCTGTCATAGATTGTCTGAGTTCTGGATTTCTCAGAAAGTTTCCTCAGGAAATTCATGATAAATAATATTTATTAAAAGTGTTCCATAGGTAATGGGGCCTTGTTGTTGATGCTGCTACACTTGGTCTTTTGGGTACATTTGCAGCTGCCAGGTACCTTTATCTTCTTTTTATTGCTACACAGCAGCTGGTTAGCACTGAGAATGCTCTGTTCTCCCCTCTTCTCACCCCGTGCTTTTAGCATTCGTGTGTGCCTCTCACCTGAATCATTTGAGAGTTTTAAATGGCAGTTTTTCAAATCTATTCCAATTTCTAGTTTAGGTGGCAACCTATGAAAGTTTTCTCATTTTGCTTATATATTCTTAAGAGTAGCTACTTTGGAGAACACAAATGACTAGAAGGAAACAACCCTCAGGAAAGATGACTTGTTGCTGTTGTTATTACTAGCACGGCTGTTTCTGTGACTTGTGTTTTTAG
Seq C2 exon
GAGTGTCTCTCAGGATACAGTCAAGAGAAAAGTCTCCAAAACAGAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022228:ENSMUST00000110485:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types