RnoINT0169487 @ rn6
Intron Retention
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45199178-45200087:+
Coord C1 exon
chr17:45199178-45199229
Coord A exon
chr17:45199230-45200013
Coord C2 exon
chr17:45200014-45200087
Length
784 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TCTGTGACTTGTGTTTTTAGGAG
3' ss Score
9.83
Exon sequences
Seq C1 exon
CTATTAATAGGTCATGCAGCTCCGAGCCTCTCACATCCTTGCTACTTGAGAG
Seq A exon
GTAGGAGTGGGGGGGTTGTTTCAGCTAAGATATATGAGGCTTCATTGAGCAACCCAGCAAAACCACATCACAAAGAAACAAATACTAGTAATGGCTTTTAAATTTAAGTATTTGGTCATAAGCTTCCTGGCTCTGCCTCTGGAGTGTTGGCATATAAACCTGAAGTACCATATCTGCTTTAAATGTTTGGTGTTTTTAATGCAAGCATCAGATTCCAAATATTTCACTTAGCTATGTCTCCTTAATCTAGAACATTAACCTCCCAACATACATCTGTTAAGTATGTAGATTGACTGAGTTCTGGATTTCTCAGAAAGTTTCCTCAGTAAATTCATGATAAATAATATTTATTAAAAGTGTTCCATAAGTAATAGGGTCCTTGGTATTGGTGCCTTATGGTGCCTTAGTATTGATGCTGCTACACTTGCTCATTTGGTTATATTTTCAACTGCCAAATACCCTTTTTTCCCTCTTTACTGATTCACAGGGGTTTGGTTAGCACAGAGAACTTTCTGTTCTTCCCTCTTTTCACCCAGTCATTTTAGCATTCATTTGTGGCTCTCAACTAAATTATTCGAAAGTTTTTAAATGGCCGTTTTTCAAATCTATTCCAATTTCTAGTTTGGGTGGCAACCTATAAATGTTTTCTCTCACTTTGCTTATATATTCTTAGGAGTAGCTGCTTTGGAGAACACAAATGGCTAGAAGGAAACAACCCTCAGGAAAGATCACTTGTTGCTGTTGTTACTACTAGCACAGCTGTTTCTGTGACTTGTGTTTTTAG
Seq C2 exon
GAGTCTCTCAGGATACAGTCAAAAGAAAGGTCTCCAAAACAAAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518:ENSRNOT00000080047:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]