HsaINT1048185 @ hg38
Intron Retention
Gene
ENSG00000272801 | RP1-170O19.23
Description
NA
Coordinates
chr7:27147366-27152598:-
Coord C1 exon
chr7:27152288-27152598
Coord A exon
chr7:27147423-27152287
Coord C2 exon
chr7:27147366-27147422
Length
4865 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGCACTTTTCTCCCGAGCAGCAG
3' ss Score
5.34
Exon sequences
Seq C1 exon
TGCGAGAATAGAGCCGCATTCTTTTGCTCCGCTCCGTCCTGCCTGCTTCGGAGCTCTGCCTTCCAGCCGGGCTCGGCTGTGCTTTGTCCGGAGATGGCGAGCGAAGGGAAGCCCCGGCCAGGCCAGGCCTGGCGGCTCCCGCTGGAGATTGGGCGCGCTCCGTTCCCGGCGCCGCGGCAGCAGCTTTGCAACTCGCAACCTGGCTAATTTCCTGCGTCCTCTGGCACCAGGAAAGAGGACAATTCTTCTCTCGGGCTGCCCAAGCGACAGCTGTCAGAGGGGCAGGAGCTTCTGGGAGCCACCGTCTGAAG
Seq A exon
GTGAGACATGTGGGGAGGAGATAGGAGCAAAGGTGGTGAGGCGACAGCCGGCGGCGGTAGCGGTGGGAGAGGGCACCCAGGGAGGCTTTAAGAGGGGCATACTCCCCCTTACCCATACTCACCCATTCACACTTGCCCCCATCACACACTACAGCCCACACACGTCACACACACAGGCACACACGCGCGCACGCACACACACACACACACCACTCCCTTTCTCTCCCCTCCCTGGCTCGCCTTGGCAGTAAGTGCCCGCCTTCCTTCGGCCCTCCGTGGCACAGCGCCAAGGCACAGGGCAGCATCCCTTGGGTCGTCTCTCTCCCCTTCCCTAGCGACCCCGTGAAGCCCAAAAGGAAGTGGCCCGGCACACTGTGTTCCCCGCCAGCCCTTTGGGTTTGGATTTTTGTGTTTTCATTCATGGCCCTATTTGGTTTTGTTGGATTCCCCAACAAGAGGAGACCATCCTTGACCTGGGAAGGTGGGAAGAGGTGAGGGCAAAGTGCATTAATCCACAGGCATTTTATTAGCATCAGCACAGCACTTTCTACTCCGTGGGAATTGGTTTCAGAGAGAAAGGTAGAAGGGGGAAACAGAAAAACTTACTAATTCAGCCAGAGTTCTCCGCTCGTTGCCGGCTTCCCTTCGCCCGGTTTTTCGATGAGAGAGGTGTCTGAAGCGCTGGGAGGGGGAATAGGTGCGTGGGTGGAATTCTGTGTTGGAGGAGAGGATGGGATTAATTGGGTGTTACTTGGTGGGAAGTTTCGGTGCAGAGGACATAATGCTGTTAGCGCGCGTGGCAGGGTCCCGCAGCTAAGGTTGAAGGAAGGACGCAAACCGAGTCTGGGCGATAGGGGGACCCCCCAATCCACCTTGGCGCAACGGACTGGCGACCGCACTCCCCACCTTCCGCGAGCGGGGAGAGGATGGTGGAGCTGCCCGGGAGGAAGCGCAGAGCGTGCTGCTGGCGGTGGCTTTGCGTAGCGCGGTGGCTCGAACTGTAGCTCGGCCTAAGTGCACATCAGACCAGATTTGCCCCGAGAACTCCTCGGACAGCGACAAGAAAAGAGTCCGAGGTTCTTTTTGTTTGTTTTTTGTTTGGGTTGTTGTTTCCCCAACTTGAGACAATATCTTGGTATGGATTCGATAAATAGGAAGGGGCTGTGGATGTTTAGGACGTTAGCCCGTGCTCTGCGTGCGCTCGGGGCGGATAAAGCGGCGCATTTGCATCCTAGGTCCGCCGCCTTCCTGACTGCGGCTGCCGCGGGCCGATTATTTATTGCGACCGTGCTGGCGCTCGCTGCTGCCACGCCGTGGCCGTCGCCGGGACCGGCGCCAGCTGCAGCCCGCCTCTTGCAGCCTGGCGCGACTGCTGTACTGGCCCCTCAGAGATTTCCCAGCAAGCAGGGTAGAGGGGGACGCAAGGGGACCTGGGGGGCGATCACCCAGAGCCTATATGGCCGGGAAATCTCCCCGCCTCGGCTACCCCTGACCGGAGCTGGACGCCGTTATAGACTCGGGTCCTCCCCCACCCCCACTCCAGCACCATGGAGACTGGTTGCACAGGCCGCCTGGCACGTCATGGCTGCTTCTGTCCAAACTGCGCGTCCCAAGGCGTTCTGGGGGCGCACGCTGGTTCAGGGAACACTCTGGCTTTGGGATTCTGCAATCGGAGAGACTACCTGTAGTCCTGAGGCCTGTAGGCCTGGCTGCTCTGAGGAGGATTGGCTATGGCAAAGAAGGACGGCTTTGGCTCCAGGAGAGGGCTGTGAAGGGCAGAGGCCGCACCTGTGTGCTTTGGGCTCTGGTCTGGGCTAGCGAGCTGGCTGGACCGAGGTGGCCTTCAAGGTCCCACACCTACATACTCCCAGACCACCCTCCAGGCTGGCAGAGGTGGAGCTGTTCAATGGGCAGCCCAGGGCAAGGGCAGACAGTGGGGCCCAGCTCGCCGTCCTGCCCCCCTTGGAGAGAAACTGAAAGGTAAGTCGCTTTCTGCGTGGCTTTGGCAGGGAGGAGAGAGAGCCCTGGGGTGGCCATTCTCACCATCGCAGGAGAGGCCCTTTGGAGGGTCTGGGGTGCCTATTCTTGCCGGAATAGCCCTCTCTCTCTAGAGAGAGAGAGAGAGAGAGAATATCTGGTTGGAGAAATGATATGCACTAGCCTTGGCTAACATGTAAAGATTCCAATGTAATATATGTTTTTCCATCTTAGTGCCTATAGAAGCTAGAAATATAATGTTTTCTGGTTCTTAGCTGAGAAATCAAATTCTCTTGTTAGCTGGAACAATAATTAGATCGAGAATCCTGGTCAAGGCATGACAAATAATAATAATAGTAAATTGACACTGACCCACCACTATGTGGGACATGGCGGAATGAAAAGGAAATCATAAATGTAAACATTGATTGTCATCTCCAAACGGTTGTTTTCATTTTAAATAATAACTTGCTTAAAATCACTGTTGTCTGATAATTTTGTTTAAGAAAAAAATAACACAAACATGTTTTTCTTCAAACAGCTATTTTTAAAAGTCCCTTTTAATTTTTTGACTCGAGTTTTCATTTTCACCTATTGAATTCTTTCCCTGAAGTAATGTGTGGGAAATGCCCAATTCTATCCTCTCATTCGAGGCCCTGCTTTATATGCAAAGTAAACCCTTTCCAGGACGGATCGACTGGGGAACAGGCATCCGGCTTCCAGGGGTAGCCCCCGTTGCCGGGCTAGCAGCCGCCTTCCAGGAGTGCCTCTTGGGCTCTTCGGAGGTCGACCTTAGGCCAGTCCTTTCCCAATTTTTTCCCTTTGTGGGAGGAGAGTTCAGGAAAAAAATTGAAAAGCAAGGAAGAGACTAAGTCATTACTAGATTCCTACTGGAACACTGCCAATTGCCACCTCCCCACTAAGTCCTGAACCGGGTGAGCCTGCATTGGCCAGGGTTTTACAGATCTTGTAAACAGTCTCCAGAAATCCATCCAAATCACGTAAATAGTCTTTCTTCAACCTCCACAGAATTGAGGATTTTAAAGCTAATTCAAGGGGTTTTACAAGCCCAACAAACACAGTTGTAAAAATGCCATTGGGCTGCTATCACATTTTACAAAACGAGATTGATCCATGTGTTGTAAAAGTCAACTATCTCGAAGGCACACCTCTCAGGCAAGAGTGAGCAGCTCAGGACAGGCTTTTAATGTCCTGTCTGGGGACCGCCAGGCCTGGGACAGCAGTGAAAGCAATTCAGGATTTCTGGAGCCGGTGAGACTATTCCCGGTTCCGGAGCGACTGAGGGGCGGCAGCCCTCCCTGCGGTCCCAGGAAGGGCAGTAAAGAGGGCGGCCCCAGGACAGTGCCGGTTGTCGGGCGCCCCGGAAACCGAGCCCATCAATTATCCCGCGGCCTTGGGCCCTGCAGAGCTGCCCTCTGTGCCCAGCTTGGCCAGGGCCTCTGCGTCTTCTGTGCCTCTGGAATGTGGACAGAGAGATTCCACATCTGGATTTTTATCTGCCTCAGCTCTGAGCGGTTCTCGCAGTGGATGCTGAGTCCCCAGGCGCTAGGCAGGGGAGCAGGTCCCTCGGCTGTCTTAGGAGCCCAGTCTCACGGCCACTGCTCTGTCGGTCCTTTCTTGTTGAAACCAGTGGTTTCTGGCCTTTCAATTCCCTGGGTTCAAAGGTGGGATGGGGACGCCCAGCTGGAAGGAGTGCTTTGACACCAGGCAGGCGCGGGCCATTGAGCCCCTTGGGACTCAAACAGGATGTGTATGTGGGAGGAGGGAATGGGTGGGAAGAACCTACGTTTGGCTGAGTCCTGGTCAGCTCGAGGTGATCCTTCAGCTCTGGGCTGCAAGGCCCAGGCCCCTGGTGCTAGCGGAGAAGGAGAGAATGAGGGAGTTCACCGATTCCTAAGGCGCACGAGTGAAGAGCATAGAGTGAAGGCCTGGTTTCTCATGGCCCTTGCTCCAGCTCAAGAACTCGCACCCACGAATAGGGGAGCGCTAGGGGAGGGGCAACTCTGGGCCGTGCCTGGAGTGCAGGCCGGCAGGGAGCAAAGCCACCTTTGTCACTGCCCCTCCTGGAGCAGGACCTTCAGGTTTCCTGTTTGGAGGAGGAGGGGCGGGGAACCCGCAAAATTCAATAAAGCAAAAAGGGGAGGAGGAAGGAGGGGACCTGGCGGGGCCTTTGAGGCGGCCCAAGCATTAGTGTCCCTACTCTGGCCTGATCTGCTCGCCACTGAAAGGGCCGTGCCCGCCGCTGGCGTTCGGGAAGAGAGCCGGGCCGGCTAGCTGTGCGCGCCCATTAATCTGCCGGGCGGGCGGCGGGCGGGCGGGCTGGGGGCTGTTTGTAACTTTGCTGCCTCGGTCGCCGCGGTCCCCGGGGAGCGGGCTCCGGCGTTCGCTCCCATTGGCCGCCGCCGCGTCAGCTGGTGCGATTTGCTGCTGTCGCTTTTGGCGTTCGGCCATCCAGAAACAAACCAGTTCGATGACTACTAATAGTTATAGCCAGATGTACTAATACACAACAAATCACAGTCCTGCAGAGGGGCGCGCAAATGAGTTCCTATTTTGTGAATCCCACTTTCCCCGGGAGCCTTCCCAGCGGCCAGGACTCCTTCTTGGGCCAGCTGCCCCTCTACCAGGCTGGCTATGACGCGCTGAGGCCCTTCCCGGCCTCGTACGGGGCGTCGAGTCTCCCGGACAAGACGTACACCTCACCTTGTTTCTACCAACAGTCCAACTCGGTCCTGGCCTGCAACCGGGCGTCCTACGAGTACGGGGCCTCGTGTTTCTATTCTGATAAGGACCTCAGTGGCGCCTCGCCCTCGGGCAGTGGCAAGCAGAGGGGCCCCGGGGACTACCTGCACTTTTCTCCCGAGCAG
Seq C2 exon
CAGTACAAACCCGACAGCAGCAGCGGGCAGGGCAAAGCACTCCATGACGAAGGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272801:ENST00000498652:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains