MmuINT0078748 @ mm9
Intron Retention
Gene
ENSMUSG00000059723 | Hoxa3
Description
homeobox A3 [Source:MGI Symbol;Acc:MGI:96175]
Coordinates
chr6:52150836-52163066:-
Coord C1 exon
chr6:52163039-52163066
Coord A exon
chr6:52150938-52163038
Coord C2 exon
chr6:52150836-52150937
Length
12101 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCCATTTGACTCTTTTGCAGGCT
3' ss Score
8.22
Exon sequences
Seq C1 exon
AGAAGCTTCTGGGAGCCGCGGTCTGAAG
Seq A exon
GTGAGACCTGTGGGAAGGAGACAGGGCAAAGGTGGGTGAGGTACTACAGTGGTAAGAGAGGGCACCAGGAACGACTTTGAAAAGGGGCCTTTTTCACGCTCTTTCAGTACTGTCCTTTCATTTTCAGCCCCAATATACACCACAGTCCAAACACGTCACTCATTCTCACCCACTACCGCCACCACCTACAATCACTCCTTTTCCCTCCTCCCTCAAGGCGGATCAGCCTTCCCTCTGTGGCACAGCGCCTTGGCACGGCGCAGCACCGCTTGGGTCTTCGCCCCCTCCCCCCTCCATTCCCCAGTGACCCTCGGGAAGCCCCAAAGGAAGTCATTTGGCATTCTACTGTTCCCTACTGGCCTCTGGGGTTTGGGATTATTTCATTCGTGACCCAATTGATTCAACTGACTTCCCCAATAGCCAGAGGTAGTTCCCAACCTGGGAACGAGGACGGAGAGGCGAGCAAAGTAGCACGGGCGTTTTGTTAGCTTCGGCACACTGTTTTTTCCTGTGGGGGCTAGGAAAGGAAGCAAACACAGAAACAAAACTTACTAATTCAGAGTTCTCCGATGGTTGCCTGCTTCGTTTGCCCGGTTTTCTGGTTAGAGTGATTTCTCGAGCCCTGGAAGAGGGGCTAGATGCGTGTGTGGAATTCTGTGTTGGAGGAGAGAACCGAGTTAATTGGGTGCTAAGGTGAGGGGGTGATGTTTCCGTGCAGGGGCTGCTGTGTTGACGCAGGTGGAAGGAGCACATCTGAGGTTTCTGAGGGAAGGTTGCAAAATGGTGTCTGGGCAATAGCAGGGTCGCAGTCCCAAGCCACCTAAGTACAGTGGCAGGTTGGTGTCCACGGTCCTCCACCTCCCCGGCTTCCAGCGAGAGGACTACAGCTAGCAGCGAGACAGCACTAAGAGCTGCGGGCCTAGCAATGGCTTTGCATGGCACGGTGGCACCAGTCATGGTGGGTGGGCCTGAAAGCGGGTCTGACCAGGTTAGATTTGCCCCCGGGAGACAGAGCTACCCAAGCATCAGTCGCGAGTTCCCTGGCTATGGTTCTTTTTTGTTTATTTGGTTTTTGGTTGTTGTTGCTGCTGCTGTTTTCCTATCTCAAGATAGTATGTCGGCCTAGGCCAGACAATTAAGAAGGACGTGTAGATGCTTGGAATGTTTGCCGCCGGACAGCTCTGTGGATGCGCCCCGGGCAGGGGCAGATAAAGCGCCGCATTTGCCTCCTAGGGCCGCTGGCTGCCTGACTGCGGCTGCCGCAGGCGGATTATTTATTGCGACCGAACAGGGAGCTCGCTGCTGCCACGCTGTGGCCGTCGCCGGGACCGGCGCCAGCAGCGTCCCGCCTCTTTGAGCCTGGCGCGACTGCTGTACGGGCCCCTCAGAATCCCCAGAAGCAGGGGAAGGGGGGCACAAAAGGGGACCTGAGGGGCAGTCTCCAAGGGTTTATTTGGCTGTGAAATCTTCTTGCTTCGGCTACCCATGACAGAAAGCTCAGCCGCTGGAATAGATTCGGGTCCTTCCCTCTCCCCTAACCCAGCACCATGGAGACTGTTTGTACAGGCCGCCTGGCTGGTCATGGCTGCTTCTGTCCAAACTGCGCGTCCCAAAGGCGTCCTGAGGGCTCACGCCAGTTGGGGAACGCTTTGGCTTTGGGATTCTGACATCGGAGAGACCATTTGTAGTTCCGAGGCCTGCTGACCTGACTGGCCCTGAGGATTGGCTATGGCATGGAAGGCAGCTCCAGGAGAGGGCTGGTAACTGACAGAGGCCCACACCTGTGTGCTTTGGGTTCTGGCCTAGAGATTTGACTGGATGGAGGTGGACCTTCTGGGTCTTCCCACACACCTGCAAGCCAGGCTCCAGGCTGGCAGAAGTGGAGGGGCTCAATGGGCAGCCAGGGAAAGGGCAAAACTGTGTGACCCTACTGCCATCTTACCCTCTTTGAAGAGAAGATAAAAGGTAAGTTTTCTGTGTGGCTGTGAGCTAGCAGAGTCCTGCGGTGATTATTCTCATCATCTCAGGATGAGGCTCTATTGAAGGTGTGGAGTTCCTGGTCTCCACTCTGTCAGGACGCGCTCTCTCTCCATATATATATTATACATATGTTTATATACATGTATATGGAAGAATAGATAGATTGACTGCTAACTTAAATGCACACTAGCCTGGGCTTACATGTTAAGATTTCAACTTAATATTTTTTCCACCTTAATGTTTACAGAAGCTAGAAATACATTTTCTGGCTTCTAGGTGAGAAAACAAATTCTTTTATTGGCTGAGACAATTAAGTCTAAAATTCAGATCAAACCATAGCAATAATGGTGGCAAGCTGTCATCAGCTCCAACTCTGTGTGAGACAGAGCTGCGTCAAAGAGAACTGATAGATGTGAACAATTAGCACCTGGGAAATGGCTACTTTCATTTCCAACAGTATTGCTGGAAATAATTGTTATCTGATTGTTTGTTGTTTAAGAACCAATAACTCAAACTTATTTTCTTCAAACAGCCTTTTAAGAAAAAAAAAATCCACCTTTCTTTTCTTCCTGAGTTATTCATTTCCCACATATTGCATCCTCTCTGTGAGAAACGTAAAATTTTATTCTCTCCTGAACAGCTCATTTATATACAAAGGAAAAAAAAACTTTCTTGGGTTGGAGAGATAAAGACGTTAAACACAAGGCCTGTGGTACAGCCTTCCTTTGGTGTGCCTTCACGGGCTCTCTGGAGGCCGATCTTAGGCAAGTCCTTTTTCAATTTTCCTCTTTTGAGGGGAGAAAGGGGGGGGATCGAAAAGCAAGGAAGAGATTAAAGAACTCTGCAATAGATTCCTACGGGACCACTGCCAAGTGTCACCTCCCCCAAGCCCGATCCCCATCAGTTCACAAGGGTCAGGGTTTTACAGATCTTACACACAACCTCCTGAGCCCCAGCTAGATCTCTTAGACACCCACAGAATTGGTTTTTTTTAAGCTAATTCTAGCCCAAACAGTCATAAAAGTGACTTCAAACCGATATCGCGTTTTTCTTTAACAAAATGACCCTGATCCACGTACAGGCAAGCCCGAAACAGGCTTTCCACATCCTGTCTGAGTATCCCCAGGCCTGGGCCGATGGTCAAGGTAATTCAGGATCCTGGAGCAAGTGACAGGGTGACAGATCTGGTTTTAGAGATACTGTAGCAGCAGGAGTAGTTTAGGGTGGGAAGGTAGGGGACAAGTGGGTATGCTTGCGACACGACCGTGCCCATCTCCGTGTGACCTTGAAACCAAGTCCATTAATGATCCTTTGAGTGAAGCTCTGGGCTCCAGAAGCTGCACTCCGTGCCCTGCTCAACCAAGGTCCCCGTGTCTCTCCTGCTTCTGGAATGAGACTGGGAGATACTGTATCCGGTTGTTTTTCCGTAGCTGCACTAAGCAGGTCCAGTAACTTAGGGAGTCCTGGGATGCTTGAAGCTGGGTGAGAGGAGTCATGCCCCACGGATGGCTTTCTGCTCCGGTCTCACAAACACCCTTCTGTAGATCATTTCTTGTGGAAAACCATGAGTTTTAGCCTTTCCTTTCTCTAAGTTCAAAGACAGGATGCAGTGCACAGCCGGTGTAGGTATTTGCTTTAAGCCCACACAGGCACGGACCATTGCAGAAGAACCACACATGGAGGGCGGTACTGAGAAGAAGGGGCTGTAGGAAGGCCCTGGCTTTGGTGTGGGCCTGGTCAGTGAGGATTGATCTTTCAGCTTTAGGGCAGTAAGGCCCAACCTGTAATAAGAATGGGAGGGAATAAGGCGCCCAGGGAACCCCTAAAGCATACAGTTCAAAAGCAGAGCGTGAAGGCCTGGCTTCTCAGAGCCCCTTTTCCCATTCAAGAACCCACACCCATGATTAAGGGAGCACAAGGGGAGGTGTGACCCAGGGTCTGACTGGGACAGGAGGCTCTAAGCAAAACCATCCGTGTCACCACCCCCTGGCTCGGGCTTGTCAGGTTTCCTGTTTGGGGAGGAAACCCAGCAAAACCCATGAAGGCAAAAAAGGAAAGAGCAGGCCTGCTCATTGACCTGGGCACTAGTGCAGAGATTTGCACATCTCTGCCCGGGTCGTGCCCGCCGCTGGCGTTTGGGGATGTGTGGGGGAGAGCGGGGCGGGCAGGCTGTGTGTGCCCATTAATCTGCCGGGCGGGCGGCGGGCGGGCGGGCTGGGGGCTGTTTGTAACTTTGCTGCCTCGGTCGCCGCGGTCCCCGGGGAGCGGGCTCCGGCGCTCTTTCCCATTGGCCGCCGCTGCGTCAGCTGGTGCGATTTGCTGCTGTCGCTTTTGGCGTTCGGCCATCCAGAAACAAACCAGTTCGATGACTACTAATAGTTATAGCCAGATGTACTAATACACAACAAATCACAGTCCTGCAGAGGGGCGCGCAAATGAGTTCCTATTTTGTGAATCCCACTTTCCCTGGGAGCCTGCCCAGCGGCCAGGACTCCTTCTTGGGCCAGCTGCCCCTCTACCCGGCCGGCTATGACGCGCTGAGGCCCTTCCCGGCCTCTTACGGGGCGTCGAGTCTTCCGGACAAGACATACACCTCACCTTGTTTTTACCAACAGTCCAACTCGGTCTTGGCCTGCAACCGGGCATCCTACGAGTACGGGGCCTCATGTTTCTATTCTGATAAAGACCTCAGTGGCGCCTCACCCTCGGGCAATAACAAGCAGAGGGGCCCCGGGGACTACCTGCACTTTTCTCCCGAGCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACACAAGCCCTGTTTACCCCTGGATGCAGCGGATGAATTCCTGTGCGGGTAAGGCTTTTCCCTGCTTCCCCACTCCAGAGAGTGTAGGGAGAATGAAAAGCTGGCAGGGAGACAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGAGATTAGGAAGGGAGGAGAGAATAGGAAGAAAGAAGGAAAGAATGAACAAAATTTCCTTCTCTCTCTGTTGTTTTTTTTAATTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACCCAAACATTCCCATGGGACAATCAGGCCCAGCCAGAGGAAAGGCAGGGCCATGAGATCCCTGTAAGGTGACACTTTAGGGGAGGGTGAAGGATTCACTGCCAAGCCTTATGAACCCTGTAACTTAAGGGACAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACTGGTTGAGATGAGAAAGCCTGCCCAGTTGCACCCTGGTACCACCCCCTCAGGTTTCCAAGCAGAGAGGGCCTCCAGAAGGTAGCATAGGCAAACTCCTCCAGGTTCCTACCCCAATCCTCTCTCTTCTGCCCTTTGGAAGTCCAGAAGCCCAGGCAGACAGATGCAGAGGCCCTCATTTCCACATTTGACCTCTTTCTGTGTCTCCACCAAAGCTTTGGAGGGCCACCTTCTCAGAATATTCATATTCTCTCTCTCTCTTTCTCCCTCCCTCCTCCCTGCCTCCCTCTTTTATCTTCTACTTAACTTTCAACTCTTAGTCAACTTCTGTCTTCTCCTGAGACCCTGCCTGAACCTCACACCTGGCTTGGGGAGTGAGTTGTCTCACCCTTGGGTACCTCTGGCACCCAGACAGCCCAACACAGTCCTCACTGCCAGTCCATCACCACCTCACTCACAGCACCCTCTCTTTGGCCCAGGTTTTCAACGATCTCACACAGAGACTCCCCTTACCCTTTGGAGCAGGGACAGAGCCTAAGGGGAAGTTTGCAACTTACAGTCGCTTTAGAGCTTAAACTCTCCCCAGTGGAGTGTTTTCAGGTGGATCACATAACTTGCTAACAATATGCAAAGATTTGAGAAGACTGGCCATATTTAACTTTCCAAAAGTACATTGAGATCTGAGGAGCCTGGATAGCGTCTTTCACAGACACAATGTAAGCATTCAATTTCCATACTGCTCCCAGAATCCCCACTGCACCCACAGACAAATAATTGCTACACTCCCTCGAAACAGTGACTTTGGCCCCTCAAATTAAGAATGGCCATGCTATTTCTTCAAGTCTAATGGTTCTCTTACAAACCACATTTGTCAAAATCAATAACTTCCCACTCAAATCGTTTTTAGGTGAAAAACATCTTGCTTGGTTATGAAATAATTCTTGCCATCCAGCCGGCTTTTTTCTTTCTTTCTTTCTTTCTCTCGGTTGTGATGTGAGAAGCTGGAGTGAAGCAGAGTAATTTCCAGTTTAGAGACTAATGGCTGGGAGGCACACGGGGCTGGGTAGGTTTTGCCTCGCTTATTCGCACCTCATTTCTGCCCACAGGTGCCGTGTATGGGAGTCACGGGCGCAGAGGCCGCCAGACCTACACGCGCTACCAGACACTGGAGCTTGAGAAGGAATTCCACTTCAACCGCTACCTGACTCGGCGGCGCCGCATCGAGATCGCTAACGCGCTTTGCCTCACCGAGCGCCAGATCAAGATCTGGTTCCAGAATCGGCGCATGAAGTGGAAAAAGGAAAATAAACTCATCAACTCCACGCAGGCCAGCGGGGAAGACTCTGAGGCCAAAGCGGGCGAGTAGACTCCAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCTTGTCTGCTCCCCAAGTTTTATTCCAGCCTGCTTCTCCCGCAGCTTAGGGAAAAGCGTCCAAACCTTTGCAAGCGGCTACGCATTTACTTATTACAGAAAACAAACAAACAAAACCCCACACACCCAACGTCAGCTGTGGGACAGACGCACTGTACACACAAACACACAGGTTTTCTCCCCAAGGCTGCCCAAGCCAGCTTGCGAGGCCCGCGATGCACCCAGAATTGGCCCTGCTGCTGTGTTAGCGCCTCTGCGCTCTGTGAGCCACAGACGCGGGGTTGTGGGGGAAGAAGGAGCCCCAGGCAGTGCCCTGTTTGGTGCCTGGGCTTTTCCGCCTTGGTCCCTCGCCATCAAATTCTAAAGGGCATCGCCAAATCGGCTCTGGCTACTGAAAAGAAAGGGTCTACGAGCTGGGCCCCAGCCCTGTCCCGGCCTCTCAGGATGCCCCTAATCAAGAAGCCTGAGGAACAAAGAGGAACACCCCCCTTCCCCGACAGAACCAAATCTCTCTATCGGCGCGTAACCGTCAGTGGGAGAGTAGCAGCCTCAGCCGAGGCAAGCCAACCTGGGTTTACAGCTTGGGAGCGACTAGGCTCCCGCAGGCTCCCAGCTCCCGATTTCCACTCTCAGCCTCATACAGCTCGGACGCAATCCACCTCGCAGCTTTCAGGACCCAAAGAGGGGGCCCAAGACCATGAGAGCCGCAAGAGTCCTGGCTTCCAAACGTGCCAGGGACGCCTGAGATGCCAGGCCTCTAGTAGAGAGAGTCTGCTCTCTTCTCAGCTACATTTGTGATTTACTTTCGTCTTTCGGAGCCCAGGAAAATAACTACGGTGATACTAGACACAGCCACGAAATGATTCCATTAGTTCCCGCAATTTATTCCCAGTGGTCTAAGCGAGATCCCAATAGCTCTACCCACCGATCCCAGCTTCCAAGCAGCCTCGGAGGCCGTTTGGGTATCAGGGCCCAATCTCTGGGTTCACCAAGAACCCTGCTACCTGGGGCCGGGCTGATCAGAGGAACCGGACCAGGGATGAAGATCTTCCAGGCTGGATAAATAAACAAATCAGATAGCAAACTAATGGCACGAAAAACATATTTGCACGGAGGAAAAAAATGATTCTGGTTATACGAGTGTATGGAATTTGACCTCGCCTCGGAGAAACACTACACAAAAGCTGTCTTTAATAGACGCCTGTGGTTTAAGAGCGGCAGGGGCACTGTCCTTCATGCGTTCACAAAAACAGAGCCGTAATTGTGGCTGCTGCTGTGGGCAGGATTTATTTCTTCAATTGGCTAAATCGTCTTCCCTTCCTCGAAGGTGATATCTGTGTTTTCAAAATTCACAGCTGCCGGCCGGGCTGGCAAACCGACCCCAACCTCTACACAAAAATAAGAGGGGATACAAAGCCGGGGAAATAAAGTTGTTGTAAATAATTCTAAGTCACCACCTCCCCCGAATCCTCTGTATCCTCGCCGGGCGTGCGATCGGCAGCTGACGGCCTCACAATTGGTACATCCTAATGGAACTGCGAGGGAAATGCAATAATTTTGCCATAATGGGCTGTAACCTCAATTCGACCCCGGCCCTTGAAGCCCGAGGTCGGAAGCGAAGCGATGCGCCCAGTCTCCAGCGGGTGGCGCTCGAGTCCGACTGAACGGCGGCAACGGGTGGCGGGGACGCGCCCAGGGCGCGCGCGCCACCCCTCTTGCCTCCACCCAACTCCCCCATTAGTGCACGAGTTTACCTCTAGAGGTCATCAGGCAGGATTTACGACTGGACAACAAAAGCACGTGATTCGAAGTCGTACCCCATATTTGGGTGCCTACGTAGGAGGGAACCGAGTACATGTCCCAGTCATTTCCATAATTCATCATAAATTGTGCAAGGGTGCTATAGACGCACAAACGACCGCGAGCCACAAATCAAGCACACATATCAAAAAACAAATGAGCTCTTATTTTGTAAACTCATTTTGCGGTCGCTATCCAAATGGCCCGGACTACCAGTTGCATAATTATGGAGATCATAGTTCCGTGAGCGAACAATTCAGGGACTCGGCGAGCATGCACTCCGGCAGGTACGGCTACGGCTACAATGGCATGGATCTCAGCGTCGGCCGTTCGGGTTCCGGCCACTTTGGCTCCGGCGAGCGCGCCCGCAGCTACGCGGCTGGGGCCAGTGCGGCGCCCGCCGAGCCCAGGTACAGCCAGCCGGCCACGTCCACGCACTCGCCACCGCCCGACCCGCTGCCCTGCTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCTCGGCCAACGCCGGCAGCACCCACATCAGCAGCAGAGAGGGGGTTGGCACGGCGTCCGCAGCCGAGGAGGACGCCCCTGCCAGCAGCGAGCAGGCGGGCGCCCAGAGCGAGCCGAGCCCGGCGCCGCCCGCTCAGCCCCAGATCTACCCCTGGATGCGCAAGCTGCACATTAGTCACGGTAAAGCCAGCCGTTTTCTGATCCACGCGTCCGTGGGGGCGCGGGTCTTGGTCACTCTCTGTTCTCTGCAGCCTCTCTCCCGTCTCTCTCCTAGTCTCGCCTCTCTCCAGCCCGCAGAGCCTCTCCCTGCGGCTCCCTTTTCCCTGCCTTTCTCTTTACTTCCTCCCAATTACTGCAGCAGCGATCTGCATTCACAGATACTGGGGAGAGGGGAGGGAGGAAAATGGGGTGGCCGAGTAAGTTTAAATGTTGAAAGAGGAAGAAATTCCGTCTGGAACCCCAGTGCCTCGGAACTCTCTTCAGGGTCAGGCCAGCGGAGTAGGGCATGCAGGGGTAGGGATGGCAGTAAGGGCCGTGAATCGGGCTTGTCAGGGGAGATAATTTATGGGAAGGGCTACGCTGGGGAAACAGCGTTACTAATTAGAGCCCCCTAAAAGGGGCTTGGGGGGAATAAGCCAGGCGAGGGCAGGCGGGATTCTGAAGTTTGAGGGCAAGAGGGAAAGCGAAGGAAAGGGAAGAAAAAGAAATCGGGCGCCCCAAGCGTACACTGGAACAGAAGGCGGCTAGCTCGGCTGGAACTTTAACTGAGGGTGACCTAGAGGCCACTTGGGAACTGAGAAAAAAAAGTAGTGCTTCAGTGCGTTTCTGGGCGGTGGGCAGACTGGGAGGGCAGTGCCCCCACTTAGGACAACTCGTAAAGGGCTAAAGAGCAGACTAGGGGGCGAGGGAAAGCCAAGCTGTCTTTAAACCCAGAGTTCCTGCCTCAGGTGGGTCGGTTGTTCCCAGAGTCCAAATCCGGTTGTTTTTCTCGCCAGAAAGGAAGGGAGAAGGAAATTTGGGGAGGGTGGGTGAGGAAGGAGAACTTGTTGAGCCTTCTCCGCAGCTCAGGACCCTGGCTGAGTTTTGGAACCAGGTGCTGAGGAGTTGGTGGCTAAACCGCTGACTTTTTTGTTACAGACAATATAGGTGGCCCAGAAGGCAAAAGGGCCCGGACGGCCTACACTCGCTACCAGACCCTGGAGCTGGAGAAAGAATTCCACTTCAACCGCTACCTGACCCGCCGAAGAAGGATCGAAATAGCTCATGCCCTTTGCCTCTCCGAGAGACAAATTAAAATCTGGTTCCAAAACAGGAGGATGAAGTGGAAAAAAGATAATAAGCTGAAAAGCATGAGTATGGCCGCGGCAGGGGGGGCTTTCCGCCCCTGAGCATCTGAGCGGCCAAAGTACTGAGCAGTAGTAGCCGGGCAGCTCTCTGTAGTGTCAGTACTAAGGTGACTTTCTGAAACTCCCCTTGTGTTCCTTCTGTGAAGAAGCCCTGTTCTCGTTGCCCTAATTCATCTTTTAATCATGAGCCTGTTTATTGCCATTATAGCGCCTGTATAAGTAGATCTGCTTCTGTTCATCTCTTTGTCCTGAATGGCTTTGTCTTGAAAAAAAAATAGATGTTTTAACTTATTTATATGAAGCAAGCTGTGTTACTTGAAGTAACTAAAACAAAAAAAAAAAAAAAAGAAAAGAGAAAAAAAAACTACACACACAAAAAGCCCCCCCACCTCGTTTAGTGCCAATGTTGTGTGTTGCACTTGAGTTCTTTAATGTGCATGTACGTGGAAGTGTTCCTGTCTCAATAGCTCCAAGCTGTTAAAGATATTTTTATTCAAACTACCTATATTCCTTGTGTAATTAATGCTGTTGTAGAGGTGACTTGATAAGACACAAATTAACTTGTTCAACGTGTAGTGGCTAGTGGCTCTGTGACGAAAACTGTGACTCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTCTGGAAGTGGCTCTTATAAGCGCAGCTTCAGTGATGTATGTTTTTGTGAAAAAGTTACAAATATTGTCCAAGTCTGGCTGTTTAAGCAAACTGTGATCAGCTTTTTTTTTTTTTTGTATTTGTTTTTAAGGAAAAAAAACACTGACTGGAAACAAAACAAAATAAACTTTCTATTGTAAGTTCTCTTGGTCTGATTTATGCCAAATAGCAAGCTGCTCTTTCTGCTTTTCTGTCTGTCCAATAGTACTGTAGGCTGCTGAGTCTGCGGCTACCTGGGCAGCCTGCCTGTTCATTGTGGCTTCACACCAACACCTTGACTCATAGCTTTCCTCACTCAGAACCATCAGAAACCTCAGGCCAGAAGAACATAGTGGGAAAAGCTGTAGGAGGTTCCAAAGCTTGAGTCCACCTTGTCCATCTCTGAGGAAACCAAGTTAACTTTGTACCAAAAAGGAGAGGAAGAGAAAGAGAGAGAAGCCAGGGCTTTGTTAGCCACACTCCGGCCCACATAGATCCAAGGCTATTGTAGGCCTTGTTGAAGAGGCTTCTCTGCCAGGCTGTAGACCCCAAACCCTCTGCCCACTAACCAACCCCAGCACTCAGTTCCCTCTACCCTTACTGAACCACTTGGCTTCTTTTGCTACAATTAATTTGCTACAAATGGAAAGTACTTACCCCATCCTAGCTCCACTGGGAAACTCCTCAGAGCAGCTAAAGCCCAACTAGAGATTTGCACATTTACTGGCTGCTTACACGGATGCCGTCTTTCCTTTTAAAAGTTATAAAACAGTAAACTTTATAAGCCCCAGTTCCGGCTATATGACATTTGGGTGCCAAATGAATAGGGTTTTGTCTATGAATTAGATCGTAAAATCATCCATAGCACAGACAGATCGCCTCACTGGCTATAAAACGTCACGTGGGGCCATTAAAGTAAGTTTTATGGTTTTGGGGAGTTGACATCCAACATTATATACCACATAACATATAATCTCACTAACGCTGGACTCCATTTGACTCTTTTGCAG
Seq C2 exon
GCTACGTGTGCTGCCTGGTCATTCAAAGTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTGAAAAATGGCTCCCTCCATGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059723-Hoxa3:NM_010452:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062616=LktC=PU(32.0=32.3)
A:
NA
C2:
PF062616=LktC=PD(66.0=93.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: