MmuALTA0000288-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000044433 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3602186-3602425:+
Coord C1 exon
chr8:3602186-3602279
Coord A exon
chr8:3602368-3602370
Coord C2 exon
chr8:3602371-3602425
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTTTTTCTTTGTGCACCTAGTAG
3' ss Score
5.71
Exon sequences
Seq C1 exon
GTCAACCTGGTGGTGCTGTTGGCTGAGATGTATATGTGCTTTGAGGTTCTGAAGCCTGATTTTGTGCAGGCCAAAGACTTGCCTGATGGACATG
Seq A exon
TAG
Seq C2 exon
CTGTCTCCCCCCGGAATACAGAGACTGTTCCATCTCAGAACAACAGTGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-13-14,13-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTGATTTTGTGCAGGC
R:
TGCTGCCACTGTTGTTCTGAG
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types