MmuALTA0000288-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000044433 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3602186-3602425:+
Coord C1 exon
chr8:3602186-3602279
Coord A exon
NA
Coord C2 exon
chr8:3602371-3602425
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TTTCTTTGTGCACCTAGTAGCTG
3' ss Score
1.17
Exon sequences
Seq C1 exon
GTCAACCTGGTGGTGCTGTTGGCTGAGATGTATATGTGCTTTGAGGTTCTGAAGCCTGATTTTGTGCAGGCCAAAGACTTGCCTGATGGACATG
Seq A exon
NA
Seq C2 exon
CTGTCTCCCCCCGGAATACAGAGACTGTTCCATCTCAGAACAACAGTGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-13-14,13-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTGATTTTGTGCAGGC
R:
TGCTGCCACTGTTGTTCTGAG
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types