RnoALTA0006715-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2150269-2150507:+
Coord C1 exon
chr12:2150269-2150362
Coord A exon
NA
Coord C2 exon
chr12:2150453-2150507
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TTTCTTTGCGCCCCTAGCAGCTG
3' ss Score
5.28
Exon sequences
Seq C1 exon
GTCAATCTGGTGGTGCTGTTGGCTGAGATGTATATGTGCTTTGAGGTTCTGAAGCCTGATTTTGTTCAGGCCAAAGACTTGCCTGACGGACATG
Seq A exon
NA
Seq C2 exon
CTGTCTCCCCCCGGAATACCGAGACTGTACCATCTCAGAACAACAGCGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986-11-13,11-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGAGGTTCTGAAGCCTGA
R:
TGCCGCTGTTGTTCTGAGATG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]